BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940812
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13460.1 | Symbols: IQD11 | IQ-domain 11 | chr5:4315759-4318... 2191 0.0
> AT5G13460.1 | Symbols: IQD11 | IQ-domain 11 | chr5:4315759-4318360
FORWARD LENGTH=1773
Length=1773
Score = 2191 bits (1186), Expect = 0.0
Identities = 1315/1377 (95%), Gaps = 9/1377 (1%)
Strand=Plus/Plus
Query 1 CAGGTGATGGTTGTGCAACAATGGCAAAGAAGAAGGGCTTGTTCACTGTATTGAAAAGGA 60
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 309 CAGGTGATGGTTGTACAACAATGGCTAAGAAGAAGGGCTTGTTCACTGTATTGAAAAGGA 368
Query 61 TTTTTATTTCAGAAGCTAATTCagaaaagaaagagaagagaagaaaaTGGACATTTTGGA 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TTTTTATTTCAGAAGTTAATTCAGAAAAGAAAGAGAAGAGAAGAAAATGGACATTTTGGA 428
Query 121 AGCTTAGGATTaaaaaaaGATTACCTTCTATTACAGCACCTCCAGAGCACAGGACAAGTC 180
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 429 AGCTTAGGATTAAGAAAAGATTACCTTCCATTACAGCACCTCCAGAGCACAGGACAAGTC 488
Query 181 ATGAATCGCACGAGGAACATAAGGAGGAAAGTGTGTCAGATGTGGGTGAAATCAGCCAAG 240
|||||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 489 ATGAATCGCATGAGGAACAGAAGGAGGAAATTGTGTCAGATGTGGGTGAGATCAGCCAAG 548
Query 241 TGTCTTGTAGTCGACAGTTAGATTCCATAGAAGAGTCAAAAGGTTCAACATCCCCAGAAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 549 TGTCTTGTAGTCGACAGTTAGATTCCATAGAAGAGTCAAAAGGTTCAACATCACCAGAAA 608
Query 301 CGGCTGATCTGGTTGTCCAATATCAAATGTTTCTAAATAGACAGGAAGAAGTTCTTGCTG 360
| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 609 CTGCTGATCTGGTAGTCCAGTATCAAATGTTTCTTAATAGACAGGAAGAAGTTCTTGCTG 668
Query 361 CTACTCGCATTCAGACAGCTTTTCGGGGTCATCTTGCAAGGAAAGCTCTACGTGCCTTGA 420
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTACTCGCATTCAGACCGCCTTTCGGGGTCATCTTGCAAGGAAAGCTCTACGTGCCTTGA 728
Query 421 AGGGAATAGTGAAGCTCCAAGCATATATCAGAGGTCGTGCTGTGAGACGTCAAGCAATGA 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 729 AGGGAATAGTGAAGCTCCAAGCATATATCAGAGGTCGTGCTGTGAGACGCCAAGCAATGA 788
Query 481 CTACACTAAAATGCTTGCAATCTGTGGTGAACATTCAGTCACAGGTCTGTGGTAAGAGAA 540
|||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 789 CTACACTAAAATGCCTGCAATCTGTTGTGAACATTCAGTCACAAGTCTGTGGTAAGAGAA 848
Query 541 CACAAATTCCTGGAGGTGCTCACAGAGATTATGAAGAGAGCAATATATTCAATGAGAACA 600
|||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 849 CACAGATTCCCGGAGGTGTTCACAGAGATTATGAAGAGAGCAATATATTCAATGATAACA 908
Query 601 TTCTCAAGGTGGACACAAACGGTCAAAAGAGATGGGACGATAGTCTTTTAACAAAGGAAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTCTCAAGGTGGACACAAACGGTCAAAAGAGATGGGACGATAGTCTTTTAACAAAGGAAG 968
Query 661 AGGCTGAAGCTGTGGTCATGAGCAAGAAAGAAGCTTCACTAAGAAGAGAAAGGATAAAGG 720
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 AAAAGGAAGCAGTGGTAATGAGCAAGAAAGAAGCTTCACTAAGAAGAGAAAGGATAAAGG 1028
Query 721 AATATGCAGTCACCCACCGGAAATCCGCGGAGTCATATCAGAAACGAAGTAACACGAAAT 780
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1029 AATATGCAGTCACCCACCGGAAATCTGCGGAGTCATACCAGAAACGAAGTAACACTAAAT 1088
Query 781 GGAAGTACTGGTTAGACGAATGGGTAGATACACAACTAACCAAGAGCAAGGAGCTCGAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GGAAGTACTGGTTAGACGAATGGGTAGATACACAACTAACCAAGAGCAAGGAGCTCGAAG 1148
Query 841 ATCTCGACTTCTCTTCAAAAACAAAACCGAAAGACGAAACTTTGAATGAGAAACAGCTTA 900
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1149 ATCTCGACTTCTCTTCGAAAACAAAACCGAAAGACGAAACTTTGAACGAGAAGCAGCTTA 1208
Query 901 AAACTCCAAGGAACTCATCACCAAGAAGATT-GATGAACAATCATAGAAGACAAGTTTCA 959
||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 1209 AAACTCCAAGGAACTCATCACCAAGAAGATTAG-TGAATAATCATAGAAGACAAGTTTCA 1267
Query 960 ATGGGTGAAGAGGAACAAAGCCCTGCCGCGGTGGC-AGTCACTACACCAACTTATATGGT 1018
|| |||||||| |||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 1268 ATAGGTGAAGATGAACAAAGCCCTGCCGCGGTCACTA-TCACTACACCAACTTATATGGT 1326
Query 1019 TGCCACAGAGTCAGCAAAGGCAAAGTCAAGATCATTAAGCTCCCCAAGGATAAGACCGAG 1078
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TGCAACAGAGTCAGCAAAGGCAAAGTCAAGATCATTAAGCTCCCCAAGGATAAGACCGAG 1386
Query 1079 AAGTTTTGACACACAGTCAGAGAGTTACTCACCGTATAAGAACAAGCTATGCCTCACGAC 1138
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1387 AAGTTTTGACACACAGTCAGAGAGTTACTCGCCATATAAGAACAAGCTATGCCTGACGAC 1446
Query 1139 CTCAATGATGAGTGAAGCACCAAGCAAAGTGAGGATAGCCAACAATGGCAGTAGTACAAG 1198
||||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||
Sbjct 1447 ATCAATGATGAGTGAAGCACCAAGCAAAGTAAGGATTGCCAACAATGGCAGTAACACTAG 1506
Query 1199 GCCAAGTGCATACCAGCAACGGTCTCCAGGGTTAAGGGGATTTAACATAGGCCCTTTGAA 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 ACCAAGTGCATACCAGCAACGGTCTCCAGGGTTAAGGGGATTTAACATAGGCCCTTTGAA 1566
Query 1259 ATCATGCAATAATAATA---CTCTATTGAACGATCTCAGCATTAATTCAGAAAGATCTCT 1315
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 ATCATGCAATAATAATAATACTCTATTGAACGATCTCAGCATTAATTCAGAAAGATCTCT 1626
Query 1316 ACCGAGCTGGAACAAGCAGAGCAGCTTGAGATGAGTGTGGATATTGAACCCTGTATA 1372
||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1627 ACCTAGCTGGAACAAGCAGAGCAGCTTGAGATGAGTG-G-ATATTGAACCCTGTATA 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5