BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940818
Length=1891
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13520.1 | Symbols: | peptidase M1 family protein | chr5:43... 3055 0.0
> AT5G13520.1 | Symbols: | peptidase M1 family protein | chr5:4341948-4344671
REVERSE LENGTH=2120
Length=2120
Score = 3055 bits (1654), Expect = 0.0
Identities = 1815/1894 (96%), Gaps = 6/1894 (0%)
Strand=Plus/Plus
Query 1 CAAGCTTTTCTCACTCAGCAATGGCACCCATTGATCCACACTCTTTCACCGATTCCTCTC 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CAAGCTTCTCTCACTCAGCAATGGCACCCATTGATCCACACTCTTTCACCGATTCCTCTC 140
Query 61 ATCCTCTCACCACGCATCTCGCTCTCTCCCTTTACCTCGATTTCAACAcctccatcatcc 120
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 141 ATCCTCTCACCACGCATGTCGCTCTCTCCCTCTACCTCGATTTCAACACCTCCATAATCC 200
Query 121 atggctccgctctcctcactctctcctccgccttctccggcgaactctctctTGATACTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 ATGGCTCCGCTCTCCTCACTCTCTCCTCCGCCTTCTCCGGCGAACTCTCTCTTGATACTC 260
Query 181 GCTGCATTTCCA-TCCATATGTTCCTCGATCCTCTAACTCTCGATCCCCTCCCTTAC-CG 238
|||||||||||| | | |||| ||||||||||||| |||||||| || |||||||| |
Sbjct 261 GCTGCATTTCCATTGC-TATGGTCCTCGATCCTCTCACTCTCGAGCCTATCCCTTACTC- 318
Query 239 CGTCTCCACCACGCCGGATCGAATTCGAGGCACCGAAGTTGTCGTAGTCCTCTCCGGTCA 298
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 319 CGTCTCCACCACACCGGATCGAATTCGGGGCACCGAAGTTGTCGTAGTCCTCTCCGGTCA 378
Query 299 ATCTTCGCTGTTAATCGTCTACTCCACTTCGCCTTCCGCCTCCGCTCTCCAGTGGCTATC 358
|||||| ||| |||| |||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 379 ATCTTCACTGCTAATTGTCTACTCCACTTCGCCTTCTGCTTCCGCTCTCCAGTGGCTTTC 438
Query 359 TCCGCTTCAAACCTTCTCCAAATTGCATCCCTATGTCTACACGCAGTGCCAGGCGATCCA 418
||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 439 GCCGCTTCAAACTTTCTCCAAATTGCATCCTTATGTCTACACGCAGTGTCAAGCGATTCA 498
Query 419 CGCCAGATCCATTTTCCCATGCCAGGACACTCCTGCCGCGAGGATTCGCTACGATGTCGT 478
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 499 CGCCAGATCCATTTTCCCATGCCAGGACACTCCTGCCGCGAGGATCCGTTACGACGTCGT 558
Query 479 CATGAACATACCGAATTCGCTCTCTGCCGTCATGTCAGCTCGCCACGTCCGTCGTAGGCT 538
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 559 TATGAACATACCGAATTCGCTCTCTGCCGTCATGTCGGCTCGCCACGTCCGTCGTAGGCT 618
Query 539 GGCGGTTCCTGAGGAGGCTAAACATCTCGAGGCGGGGTCGCT-GGGTCCGTCACTGTGGT 597
|||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||
Sbjct 619 TGCGGTTCCTGAGGAGGCTAAACATCTCGAGGCTGGGTCGCTGGGGT-CGTCACTGTGGT 677
Query 598 GTGGTGAGGATAGAGTTGTGGAAGAGTTTGCTATGGAACAGCCTATACCGCCTTATCTAT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GTGGTGAGGATAGAGTTGTGGAAGAGTTTGCTATGGAACAGCCTATACCGCCTTATCTAT 737
Query 658 TTGCGTTCGCCGTAGGTGAGTTAGGGTTTCGGGAAGTTGGACCTAGGACTCGGGTATACA 717
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TTGCTTTTGCCGTTGGTGAGTTAGGGTTTCGGGAAGTTGGACCTAGGACTCGGGTATACA 797
Query 718 CAGAATCTGCCGCCGTTGAAGTTCTAGATGCGGCGGCTCTGGAGTTTGCAGGAACGGAGG 777
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 798 CAGAATCTGCCGCCATTGAAGTTCTAGATGCGGCTGCTCTGGAGTTTGCAGGAACGGAGG 857
Query 778 ATATGATCAAGCAAGGGGAGAAGCTGTTTGGAGATTACGAGTGGGAGAGATTTGACTTAC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ATATGATCAAGCAAGGGGAGAAGCTGTTTGGAGATTACGAGTGGGAGAGATTTGACTTAC 917
Query 838 TGGTGCTGCCTCCGAGTTTTCCTTATGGAGGGATGGAGAATCCAAGAATGGTTTTCCTGA 897
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 918 TGGTGCTGCCTCCGAGTTTTCCTTATGGAGGTATGGAGAATCCAAGAATGGTTTTCCTGA 977
Query 898 CGCCTACTGTAATCAAAGGAGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCAC 957
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 CGCCTACTGTTATCAAAGGAGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCAC 1037
Query 958 ATAGCTGGACTGGGAATTTGATCACTAACATCAACAACGAACATTTCTGGTTGAATGAGG 1017
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 1038 ATAGCTGGACTGGGAATTTGATCACTAATATCAACAATGAACACTTCTGGTTGAATGAGG 1097
Query 1018 GATTTACAACTTACGCAGAGAGGAGAATTGTGGAAGTTGTTCAAGGCCCGGATAGAGCTA 1077
|||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 1098 GATTTACAACTTACGCAGAGAGGAGAATTGTGGAGGTTGTTCAAGGGGCGGATATAGCTA 1157
Query 1078 CTCTGAACATTGGCATTGGTTGGAGGGGTTTAACTGATGAAATGGAACGGTTTAAGGACA 1137
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 CTTTGAACATTGGCATTGGTTGGAGGGGTTTAACTGATGAAATGGAACGGTTTAAGGACA 1217
Query 1138 ACTTGGAGTGCACTAAACTGTGGAACAAACAAGAAGGTGTTGATCCAGATGATGTGTATT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1218 ACTTGGAGTGCACTAAACTGTGGAACAAACAAGAAGGTGTTGATCCAGATGATGTATATT 1277
Query 1198 CTCAGGTCCCATATGAAAAAGGATTCCAATTTGTGTTGCGAATTGAACGCCAGATTGGAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 CTCAGGTCCCATATGAAAAAGGATTCCAATTTGTGTTGCGAATTGAACGCCAGATTGGAA 1337
Query 1258 GGACTGCGTTTGACGAATTCCTCAAGAAATACATTGCTACTTTCAAGTTCAAGTCAATCG 1317
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GAACTGCTTTTGACGAATTCCTCAAGAAATACATTGCTACTTTCAAGTTCAAGTCAATCG 1397
Query 1318 ATACAAGCACATTTCTTGAATTCCTGAAAGCAAATATCCCCGGCATAGAGAAAGAGATCA 1377
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1398 ATACAAACACATTTCTTGAATTCCTGAAAGCAAACATCCCTGGCATAGAGAAAGAGATCA 1457
Query 1378 ACCTACAGCTGTGGACTGAGGGCGTTGGTATACCAGAGGATGCATATGAACCAGTCTCAA 1437
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 ATCTACAGCTGTGGACTGAGGGCGTTGGTATACCAGAGGATGCATATGAACCAGTCTCAA 1517
Query 1438 CCATTTACACAAAGATCATATCCCTGGCAAAAGAGTTTAAGGAAGGAAGGATGCCAAGTG 1497
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1518 CCATTTACACAAAGATCATATCCCTGGCGAAAGAGTTTAAGGAAGGAAAGATGCCAAGTG 1577
Query 1498 AGGATGATGTTGCTGAGTGGAACGGACAGGAATGGGAGCTGTACTTGGAGAATCTTCCTA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AGGATGATGTTGCTGAGTGGAACGGACAGGAATGGGAGCTGTACTTGGAGAATCTTCCTA 1637
Query 1558 AATCATGTGAACCTTCTCAGGTGATGGCCTTGGACAAGCGGTACAGACTAGCAGAATCGA 1617
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1638 AATCATGTGAACCTTCTCAGGTCATGGCCTTGGACAAGCGGTACAGACTGGCAGAATCGA 1697
Query 1618 AGGACTATGAAGTGAAGGTCTCGTTTCTGCAGCTTGCAGTCGCATCCAAGTGCAGAGAGT 1677
| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1698 AAGACTATGAAGTGAAGGTCTCGTTTCTGCAACTTGCAGTCACATCCAAGTGCAGAGAGT 1757
Query 1678 ACCATGGGGAAGTGAAGAAAACACTAAAAGAGGTAGGGAGGATGAAGTACCTGCGTCCAC 1737
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1758 ACCATGGGGAAGTGAAGAAAACACTAAAAGAGGTAGGAAGGATGAAGTACCTGCGTCCAC 1817
Query 1738 TCTTCACTGCTCTTGCACAAGCTGGTGGAACAGAAGAGAAGCAGCTGGCAAAACAGGTGT 1797
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1818 TCTTCACTGCTCTTGCACAATCTGGTGGAACAGAAGAGAAGCAGCTGGCAAAACAGGTGT 1877
Query 1798 TCGCAGAGGCTCGAGAAACTTACCACCCTATAGCTCAGGGAGTGGTTGAGTCTATTCTCT 1857
| ||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||
Sbjct 1878 TTGCAGAAGCTCGAGAAACTTATCACCCCATAGCTCAGGGAGTTGTTGAATCTATCCTCT 1937
Query 1858 CTAAGTACATCTGAACAAGACCCTTCTTATAGCT 1891
|||||||||||| ||||||||| || | ||||||
Sbjct 1938 CTAAGTACATCTAAACAAGACCGTTATGATAGCT 1971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93624016425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5