BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940821
Length=2080
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3421 0.0
> AT5G13560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G37370.1);
Has 12055 Blast hits to 8846 proteins in 811 species: Archae
- 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants
- 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI
BLink). | chr5:4360631-4366448 REVERSE LENGTH=3118
Length=3118
Score = 3421 bits (1852), Expect = 0.0
Identities = 2007/2083 (96%), Gaps = 6/2083 (0%)
Strand=Plus/Plus
Query 1 ATAAGATCGACGAGCATAATATGTCGTGGCTGCGAACGGCCGTGAATAAGGCGGTGGAGG 60
||||||||| | | | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 114 ATAAGATCG-C-TG-AGAATATGTCGTGGCTGCGAACGGCCGTGAATAAGGCTGTGGAGG 170
Query 61 TCGGAAACCGCAAAAACATCACACGAACCGTCAAGAACTATGCCGACTCCGTCGTCCAGC 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 171 TCGGAAACCGCAAAAACATCACACGAACCGTCAAAAACTATGCCGACTCCGTCGTCCAGC 230
Query 121 AGGCTGGCCAAGCCGTCGCTGAAGGAGCCAAATTGTTTCAAGACCGCATTGGTGTCGGGG 180
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 231 ACGCTGGCCAAGCCGTCGCTGAAGGAGCCAAATTGTTCCAAGACCGCATTGGTGTTGGGG 290
Query 181 CCTATAAGAGTGTTAATCAGACGATTCAGAGATTGGAAGAAGCTGCAGTCTCATATAGAG 240
| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 291 CTTATAAGAGTGTTCATCAGACAATTCAGAGATTGGAAGAAGCTGCAGTCTCATATAGAG 350
Query 241 GTCATGAAAGGGCATTGCTGATTTCTAGATGGCTAAATGTGCTTAAGGAGATTGATAGAG 300
|||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 351 GTCAAGAAAGGGCATTGCTGATTACTAGATGGCTAAGTGTGCTTAAGGAGATTGATAGAG 410
Query 301 CTACTGACAGTTCTCTAAAGGATAAACAATTGAGTTCAGAGGAACAACTTGCTTCTGATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CTACTGACAGTTCTCTAAAGGATAAACAATTGAGTTCAGAGGAACAACTTGCTTCTGATG 470
Query 361 AAGCAAAGAAACGTGAATGGGTGTTGTATTACGATCCAGATATAGGCGGTGAGCCACTTA 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 471 AAGCAAAGAAACGTGAATGGGTTTTGTATTACGATCCAGATATAGGCGGTGAGCCACTTA 530
Query 421 ACTTCCGTGATGTTTTTCTGCAAAGTCAAGCTCTGGAGGGGATCGTTCTGTCCATGATTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ACTTCCGTGATGTTTTTCTGCAAAGTCAAGCTCTGGAGGGGATCGTTCTGTCCATGATTA 590
Query 481 TTGAACCACCACATGACGAAGAAATTACTCTACTCCTGGAGATGTTTGGGCTTTGTCTGA 540
||||||||||||||||||||||||| || |||||||||||||||||||| |||||| |||
Sbjct 591 TTGAACCACCACATGACGAAGAAATCACGCTACTCCTGGAGATGTTTGGCCTTTGTTTGA 650
Query 541 ATGGAGGAAAGGAAGTTCATGATGCCATAGTTAGCAGTATGCAGGATCTTGCTACAGTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ATGGAGGAAAGGAAGTTCATGATGCCATAGTTAGCAGTATGCAGGATCTTGCTACAGTCT 710
Query 601 TTTCGAGTTACAAGGATGAAGTTTTGGTTAAGCAGGACGAATTGCTTCAGTTTGCCCAAA 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TTTCAAGTTACAAGGATGAAGTTTTGGTTAAGCAGGACGAATTGCTTCAGTTTGCCCAAA 770
Query 661 ATGCTATCACAGGGTTGAAGATTAATGCTGAAATGCTGAGAATTGATGCTGAAGCTTCTG 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 ATGCCATCACAGGGTTGAAGATTAATGCTGAAATGCTGAGAATTGATGCTGAAGCTTCTG 830
Query 721 ATCTGAGGAAGAAACTCGAGAAGATGAATGCCTCTCAAATTCCACAGGAGAGTGGAGACA 780
|| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 831 ATTTGAGAAAGAAACTCGAAAAGATGAATGCCTCTCAAATTCCACAGGAGAGTGAAGACA 890
Query 781 AGGAACTTAAAGAGGCTCCTTTAACAATTGAGGCTTTCAAAGAAACACTTGCAAAGATTC 840
|||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 891 AGGAACATAAAGAGACTCCTTTAACAATAGAGGCTTTCAAAGAAACACTTGCAAAGATTC 950
Query 841 GTCTTTGCTCCAGATTAGAAGGTCTTCTAATTAGAAAGAGACAACTAAGCAACGGTGATT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 951 GTCTTTGCTCCAGATTAGAAGGTCTTCTAATTAGAAAGAGACAACTAAGCAATGGTGACT 1010
Query 901 CGCCAGATATACATGCTCAGAAAGTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAA 960
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CACCAGATATACATGCTCAGAAAGTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCAA 1070
Query 961 ATTCAACTTCCAAAGCCGAGAAACGAATATCAGAAAACAGACTTCAGAAAGAGGAGGCAC 1020
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1071 ATTCAACTTCCAAAGCCGAGAAACGAATATCAGAGAACAGACTTCAGAAAGAGGAAGCAC 1130
Query 1021 TAAAAGCTCGTGTGGTAAAAGCAAATGAAACCGGTGAAAAGGAAAAGGAATTGGGTGCAG 1080
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1131 TAAAAGCTCGTGTGGTGAAAGCAAATGAAACCGGTGAAAAGGAAAAGGAGTTGGGTGCCG 1190
Query 1081 AAATTGCACAGCTTGAGAAACAAAGAGAAGAGCTGGAAGCCGAACTGAAGAGGGTAAATA 1140
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1191 AAATTGCACAGCTTGAGAAACAAAGAGATGAGCTGGAAGCCGATCTGAAGAGGGTAAATC 1250
Query 1141 TATCATTAGCTGCTGCTCAAGCTCGGTTCCGTAATGCGACAGAGGAGAGGGATCAATTTG 1200
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1251 TATCGTTAGCTGCTGCTCAAGCTCGGTTTCGTAATGCGACAGAGGAGAGGGATCAATTTG 1310
Query 1201 GTGAAGCCAACAATCAGATAATCGCTCACCTGAAAACAAAGGAGGATGACCTGTCCAAAT 1260
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1311 GTGAAGCCAACAATCAGATAATCGCTCACCTGAAAACGAAGGATGATGACCTGTCCAAAT 1370
Query 1261 CAGTTGTAGCTTGTAAGAAAGAAGCAGAAGTTATCAAGACGTGGATTAATTTTCTTGAGG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CAGTTGTAGCTTGTAAGAAAGAAGCAGAAGTTATCAAGACGTGGATTAATTTTCTTGAGG 1430
Query 1321 ATACATGGCTTCTTCAATGCTCATATATCGAAACGAAGGATAAGCAGACTTTGGACGAAT 1380
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1431 ATACATGGCTTCTTCAGTGCTCACATATCGAAACGAAGGATAAGCAGACTTTGGACGAAT 1490
Query 1381 TGGAGAAGCATGAGGATTACTTCTCGGATGTGGCCTTTAATATACTCTCTGTGTACAAGA 1440
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1491 TGGAGAAGCATGAAGATTACTTCTCGGATGTGGCCTTGAATATACTCTCTGTGTACAAGA 1550
Query 1441 AGGAGGTGGCACCGTTAATAAGTCGTATAGAAAATTATGTGGAAAATCTGAAGAATCTGG 1500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 AGGAGGTGGCACCTTTAATAAGTCGTATAGAAAATTATGTGGAAAATCTGAAGAATCTGG 1610
Query 1501 GTCCTGGGTCGGAGAAGCCACCAAACGCAGATCAGGGAGACAATCAGGTATCAAACCCGA 1560
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1611 GTCCTGGGTCGGAGAAGCCACCAAATGCAGATCAGGGAGACAATCAGGTATCAAACCCGA 1670
Query 1561 GGAAAATTCTGGAGCAGGAGTATATAGACTATGAGACCAAGATTATTACCACCTTCAGCA 1620
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1671 GGAAAATTCTGGAGGAGGAGTATATAGACTATGAGACCAAGATCATTACCACATTCAGCA 1730
Query 1621 TTGTGGACAACATGAAAGAGCAATTCCAGGTTCTCCAAAGCAAACTGGATAAAAAGGACG 1680
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 TTGTGGACAACGTGAAAGAGCAATTCCAGGTTCTCCAAAGCAAACTGGATAAAAAGGACG 1790
Query 1681 ACCGGCGTGTGAAAGAGCTGTTTGATGACATGGAGAAAATGAGGCAGCAATTTGAATCGA 1740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1791 ACCGGCGTGTGAAAGAGCTGTTTGATGACATGGAGAAAATGAGGCAGCAATTTGAATCCA 1850
Query 1741 TAGCGAGGCCGATGTTAGAGATAGAGATTCCATCGCCTAAAAGCAGTGTTACATCACCTA 1800
|||||||||| | ||||||||||||||||||||| |||| |||||||||||| || ||||
Sbjct 1851 TAGCGAGGCCAACGTTAGAGATAGAGATTCCATCACCTAGAAGCAGTGTTACGTCCCCTA 1910
Query 1801 AAAGCAGTGCTACATCACCCAAATCTCCCAAGCCCAGCAGTAGTAGCATGGATGATTCAA 1860
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 1911 AAAGCAGTGCTACATCACCCAAATCTCCCAAGCCTAGCAGTAGTAGCATGAATGCTTCAA 1970
Query 1861 CTGAATCTACTCAGACCCAAAAGCCGGAGCTGAGCAATCCTCCTCAGGCACCCAATCCTA 1920
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1971 CTGAATCTACTCAGACCCAAAAGCCAGAGCTGAGCAATTCTCCTCAGGCACCCAATCCTG 2030
Query 1921 CAGCTGGTTCCAGTCAGGAGTTTAACCCTGAAGCTGAACTAGCCGAGCTAGAATCTGAAT 1980
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2031 CAGCTGGTTCCAGTCAAGAGTTTAACCCTGAAGCCGAACTAGCCGAGCTGGAATCTGAAT 2090
Query 1981 TTGGTAAGGTGGCTCGTGATTACTCTGCAGATGAGGTTGATGGATGGGAATTCGATGAAC 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 TTGGTAAGGTGGCTCGTGATTACTCTGCAGATGAGGTTGATGGATGGGAATTCGATGAAC 2150
Query 2041 TTGAGAAAGAACTGCAGTAGTA--ATC-ATGACACGCCTGCCT 2080
| |||||||||||||||||||| ||| || ||||||||||||
Sbjct 2151 TGGAGAAAGAACTGCAGTAGTATGATCCATCACACGCCTGCCT 2193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103111919430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5