BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940838
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 | chr5:44291... 1110 0.0
> AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 | chr5:4429110-4430837
REVERSE LENGTH=1375
Length=1375
Score = 1110 bits (601), Expect = 0.0
Identities = 655/681 (96%), Gaps = 3/681 (0%)
Strand=Plus/Plus
Query 177 GGTACCAAGGCAAAGGTTTGAATTTGCAAGACCTTATTCAGGAAGGAAGCATAGGACTGC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 683 GGTACCAAGGCAAAGGTTTGAATTTGCAAGACCTTATTCAGGAAGGAAGCATAGGGCTGC 742
Query 237 TTCGTGGAGCTGAGAGATTTGATCCCGACAGAGGATACAAACTATCAACTTATGTCTACT 296
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 743 TTCGTGGAGCTGAGAGATTTGATCCCGACCGAGGATACAAACTATCAACTTATGTCTACT 802
Query 297 GGTGGATCAAACAGGCCATCTTAAGGGCTATCGCGCATAAATCTAGACTTGTCAAATTGC 356
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 803 GGTGGATCAAACAGGCCATCTTAAGGGCTATAGCGCATAAATCTAGACTTGTCAAATTGC 862
Query 357 CGGGAAGCATGTGGGAGTTGACTGCAAAAATTGCAGAAGCTAGTAATGTTTTGACCAGAA 416
||||||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||
Sbjct 863 CGGGAAGCATGTGGGAGTTAACGGCAAAAGTTGCAGAAGCTAGTAATGTGTTGACCAGAA 922
Query 417 AACTAAGACGGCAACCAAGCTCTGAAGAGATTGCAGAGCACCTAAACCTTC-ATGTATCT 475
|||||||| |||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 923 AACTAAGAAGGCAACCAAGCTGTGAAGAGATTGCAGAGCACCTAAACC-TCAATGTATCC 981
Query 476 GCGGTTAGACTCGCTGTGGAGCGTAGCAGATCCCCTGTTTCGTTGGACCGAGTCGCGTCT 535
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GCGGTTAGACTAGCTGTGGAGCGTAGCAGATCCCCTGTTTCGTTGGACCGAGTCGCGTCT 1041
Query 536 CAAAATGGCCGCATGACTTTGCAGGAAATTGTACGGGGACCGGATGAAACAAGGCCAGAG 595
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1042 CAAAATGGCCGCATGACATTGCAGGAAATTGTACGGGGACCAGATGAAACAAGGCCAGAG 1101
Query 596 GAGATGGTGAAAAGGGAACACATGAAGCATGAGATTGAACAGCTTTTGGGAAGTCTTACC 655
|||||||||||||||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 1102 GAGATGGTGAAAAGGGAACACATGAAGCATGAGATTGAGCAACTCTTAGGAAGTCTTACC 1161
Query 656 GCGAGAGAATCTCGAGTATTGGGACTCTACTTTGGGCTCAACGGAGAGACTCCTATGTCG 715
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1162 GCTAGAGAATCTCGTGTATTGGGACTTTACTTTGGGCTCAACGGAGAGACTCCTATGTCG 1221
Query 716 TTTGAAGAGATAGGTAAGTCGTTGAAGCTTTCGAGAGAGAGGGTGAGGCAAATCAATGGC 775
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1222 TTTGAAGAGATAGGTAAGTCGCTGAAGCTTTCGAGAGAGAGGGTGAGACAAATCAATGGC 1281
Query 776 ATTGCTTTGAAGAAGCTACGGAATGTACATAATGTGAATGATTTGAAAATATACTATTCC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 ATTGCTTTGAAGAAGCTACGGAATGTACATAATGTGAATGATTTGAAAATATACTATTCC 1341
Query 836 TCTAGTGAATAAAA-GCGAAT 855
|||||||||||||| || |||
Sbjct 1342 TCTAGTGAATAAAAAGCAAAT 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5