BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940852
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13850.1 | Symbols: NACA3 | nascent polypeptide-associated c... 1024 0.0
AT3G12390.1 | Symbols: | Nascent polypeptide-associated comple... 614 4e-175
> AT5G13850.1 | Symbols: NACA3 | nascent polypeptide-associated
complex subunit alpha-like protein 3 | chr5:4471277-4472855
FORWARD LENGTH=878
Length=878
Score = 1024 bits (554), Expect = 0.0
Identities = 625/658 (95%), Gaps = 10/658 (2%)
Strand=Plus/Plus
Query 4 ctctctctctctcAAATATGACTGCCGAACAGAAAGAGGAGCTCGCCGCCAAATTGGAAG 63
|||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 68 CTCTCTCTCTAGAAAACATGACTGCCGAACAGAAAGTGGAGCTCGCCGCCAAATTGGAAG 127
Query 64 AACAGAAGATCGATCTTGATAAGCCTGAGGTTGAAGACGATGATGACAATGATGAGGATG 123
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 128 AGCAGAAGATCGATCTTGATAAACCTGAGGTTGAAGATGATGATGACAATGATGAGGATG 187
Query 124 ATTCGGACGACGATGACGAGGCGGAGGAGGGACATGATGGAGAGGCCGGCGGCCGGTCAA 183
|||| || |||||||||||||| ||||||||||||||| |||||||| ||||||||||
Sbjct 188 ATTCCGAGGACGATGACGAGGC---GGAGGGACATGATGGGGAGGCCGGTGGCCGGTCAA 244
Query 184 AGCAAAGCAGAAGTGAGAAAAAGAGTCGTAAAGCAATGTTGAAGCTTGGGATGAAACCCA 243
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 245 AGCAAAGCAGAAGTGAGAAAAAGAGTCGTAAAGCTATGTTGAAGCTTGGGATGAAACCAA 304
Query 244 TCACTGGTGTTAGCCGTGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTGATATCAA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TCACTGGTGTTAGCCGTGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTGATATCAA 364
Query 304 AACCTGATGTGTTCAAGAGTCCAGCATCAGATACATATGTGATCTTTGGTGAGGCCAAGA 363
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 365 AACCTGATGTGTTCAAGAGTCCAGCTTCAGATACATATGTGATCTTTGGTGAGGCCAAGA 424
Query 364 TAGAGGATTTGAGCTCGCAGCTGCAGAGTCAAGCCGCAGAGCAGTTCAAGGCTCCCAACC 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TAGAGGATTTGAGCTCGCAGCTGCAGAGTCAAGCCGCAGAGCAGTTCAAGGCTCCCAACC 484
Query 424 TCAGCAATGTGATATCACAGGGAGAAACATCGAGTGGTGCAGCTGCAGCTGCTGTTCA-G 482
||||||| ||||| |||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 485 TCAGCAACGTGATTTCACAGGGAGAAACATCGAGTGCTGCAACTGCAGCTGCTGTTCAAG 544
Query 483 --GATGATGATGAAGAGGTGGACGAGGAGGGAGTAGAGCCAAAGGACATCGAGCTGGTGA 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 545 ATGATGATGATGAAGAGGTAGACGAGGAGGGAGTAGAGCCAAAGGACATCGAGCTTGTGA 604
Query 541 TGACCCAAGCAGGAGTGTCTAAGCCAAGGGCAGTTAAGGCCCTCAAGGC-CGCTAATGGA 599
|||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 605 TGACCCAAGCAGGAGTGTCTAAGCCAAGGGCAGTTAAGGCGCTCAAG-CTCGCTAATGGA 663
Query 600 GATATAGTCTCTGCCATCATGGAGCTTACCACCTAAATCTGAAACGTTTTC-TACTTT 656
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 664 GATATAGTCTCTGCCATCATGGAGCTTACCACCTAAATCCGAAAC-TTTTCCTACTTT 720
> AT3G12390.1 | Symbols: | Nascent polypeptide-associated complex
(NAC), alpha subunit family protein | chr3:3942257-3943809
FORWARD LENGTH=913
Length=913
Score = 614 bits (332), Expect = 4e-175
Identities = 556/659 (84%), Gaps = 35/659 (5%)
Strand=Plus/Plus
Query 12 ctctcAAATATGACTGCCGAACAGAAAGAGGA-GCTCGCCGCCAAATTGGAAGAACAGAA 70
||||| | ||||||| ||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 80 CTCTC-ATTATGACTACCGAAGAGAAAGA-GATCCTCGCCGCCAAATTGGAAGAACAGAA 137
Query 71 GATCGATCTTGATAAGCCTGAGGTTGAAGACGATGATGACAATGATGAGGATGATTCGGA 130
||||||||| |||||||| || ||||| ||||||||||| || || || ||||| || ||
Sbjct 138 GATCGATCTCGATAAGCCCGAAGTTGAGGACGATGATGATAACGAAGACGATGACTCTGA 197
Query 131 CGACGATGACGAGG-CG--GAGGAGG--GA--CA-T-GATGGAGAGGCCGGCGGCCGGTC 181
|||||||| ||| | || |||| || | | ||||||||||| || || |||
Sbjct 198 TGACGATGATAAGGATGATGACGAGGCTGATGGACTAGATGGAGAGGCAGGAGGTAAGTC 257
Query 182 AAAGCAAAGCAGAAGTGAGAAAAAGAGTCGTAAAGCAATGTTGAAGCTTGGGATGAAACC 241
||| ||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||||||
Sbjct 258 AAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAGCTTGGCATGAAACC 317
Query 242 CATCACTGGTGTTAGCCGTGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTGATATC 301
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 318 CATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTCATATC 377
Query 302 AAAACCTGATGTGTTCAAGAGTCCAGCATCAGATACATATGTGATCTTTGGTGAGGCCAA 361
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 378 AAAGCCTGATGTGTTCAAGAGTCCAGCATCAGACACATATGTGATCTTTGGAGAGGCGAA 437
Query 362 GATAGAGGATTTGAGCTCGCAGCTGCAGA-GTCAAGCCGCAGAGCAGTTCAAGGCTCCCA 420
||| |||||||||||||| ||| | ||| | ||||| |||||||| |||||||| || |
Sbjct 438 GATCGAGGATTTGAGCTCTCAGATCCAGTCG-CAAGCAGCAGAGCAATTCAAGGCACC-A 495
Query 421 -ACCTCAGCAATGTGATATCACAGGGAGAAACATCGAGTGGTGCAGCTGCAGCTGCTGTT 479
| |||||||||||||| ||| |||| || ||||||| | ||||||| || |||
Sbjct 496 GATCTCAGCAATGTGATCTCAAAGGGTGAGTCATCGAG-----C-GCTGCAG-TG--GTT 546
Query 480 CAGGATGATGATGAAGAGGTGGACGAGGAGGGAGTAGAGCCAAAGGACATCGAGCTGGTG 539
||||||||||| | ||||| |||||||| || || |||||||||||||| ||| |||||
Sbjct 547 CAGGATGATGA-G--GAGGTTGACGAGGAAGGTGTTGAGCCAAAGGACATTGAGTTGGTG 603
Query 540 ATGACCCAAGCAGGAGTGTCTAAGCCAAGGGCAGTTAAGGCCCTCAAGGCCGCTA-ATGG 598
||||| |||||||||||||||| ||||| || || ||||| |||||||| || | ||||
Sbjct 604 ATGACTCAAGCAGGAGTGTCTAGGCCAAATGCTGTGAAGGCTCTCAAGGCTGC-AGATGG 662
Query 599 AGATATAGTCTCTGCCATCATGGAGCTTACCACCTAAATCTGAAACGT-TTT-CTACTT 655
|||||| ||||||||||||||||||||||||||||||| | ||| || ||| ||||||
Sbjct 663 AGATATTGTCTCTGCCATCATGGAGCTTACCACCTAAACC--AAA-GTCTTTTCTACTT 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5