BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940858

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G13910.1 | Symbols: LEP | Integrase-type DNA-binding superfa...  1031    0.0  


> AT5G13910.1 | Symbols: LEP | Integrase-type DNA-binding superfamily 
protein | chr5:4482450-4483085 REVERSE LENGTH=636
Length=636

 Score = 1031 bits (558),  Expect = 0.0
 Identities = 610/636 (96%), Gaps = 0/636 (0%)
 Strand=Plus/Plus

Query  23   ATGAACACAACATCGTCAAAGAGCAAGAAGAAGCAAGACGATCAAGTGGGTACAAGGTTT  82
            |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  1    ATGAACACAACATCATCAAAGAGCAAGAAGAAGCAAGACGATCAGGTTGGTACAAGGTTT  60

Query  83   CTTGGGGTGAGAAGAAGGCCTTGGGGAAGATACGCAGCTGAGATAAGAGACCCAACTACG  142
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   CTTGGGGTGAGAAGAAGGCCTTGGGGAAGATACGCAGCTGAGATTAGAGACCCAACTACG  120

Query  143  AAGGAGCGTCACTGGCTTGGCACTTTTGATACGGCCGAAGAAGCTGCCTTGGCCTACGAT  202
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  121  AAGGAGCGTCACTGGCTTGGCACTTTCGATACGGCGGAAGAAGCTGCCTTGGCCTACGAT  180

Query  203  AGAGCCGCTCGGTCCATGCGTGGCACACGTGCCAGAACCAACTTTGTTTACTCAGACATG  262
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGAGCTGCTCGGTCCATGCGTGGCACACGTGCCAGAACCAACTTTGTTTACTCAGACATG  240

Query  263  cctccttcctcctccgtcacttccattgtttctcctgatgatccccctcctcctccacct  322
            ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct  241  CCTCCTTCCTCATCCGTCACCTCCATTGTTTCTCCTGACGATCCTCCTCCTCCTCCACCT  300

Query  323  cctcctgctcctcctAGCAATGATCCTGTCGATTACATGATGATGTTTAACCAATACTCA  382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CCTCCTGCTCCTCCTAGCAATGATCCTGTCGATTACATGATGATGTTTAACCAATACTCA  360

Query  383  TCCACTGACTCGCCAATGCTTCAGCCTCATTGTGATCAAGTGGATAGTTACATGTTTGGT  442
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  361  TCCACTGACTCGCCAATGCTTCAGCCTCATTGTGATCAAGTGGACAGTTACATGTTTGGT  420

Query  443  GGCTCTCAATCTACTAATTCTTATTGTTATTCTAACAACAGTAGTAACGAGCTGCCTCCT  502
            |||||||||||| | ||||||||||| ||||||||  |||||||||| ||||||||||||
Sbjct  421  GGCTCTCAATCTTCGAATTCTTATTGCTATTCTAATGACAGTAGTAATGAGCTGCCTCCT  480

Query  503  CTGCCGAGCGACTTGTCCAATTCGTGTTATATCCAACCACAGTGGACCTGGAGCGGTGAT  562
            || |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| 
Sbjct  481  CTCCCGAGCGACTTGTCGAATTCGTGTTATAGCCAACCACAGTGGACCTGGACCGGTGAC  540

Query  563  GACTACTCGGCTGAGTACGTACATAGTCCAATGTTCAGCAGAATGCCTCCGGTTTCTGAC  622
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GACTACTCGTCTGAGTACGTACATAGTCCAATGTTCAGCAGAATGCCTCCGGTTTCTGAC  600

Query  623  TCTTTCCCTCAAGGTTTCAACCACTTCGGCTCCTAA  658
            ||||||||||||||||||||| |||| |||||||||
Sbjct  601  TCTTTCCCTCAAGGTTTCAACTACTTTGGCTCCTAA  636



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32802897991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5