BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940863

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00090.1 | Symbols:  | structural constituent of ribosome;pr...  71.3    5e-12
  ATMG01390.1 | Symbols: RRN18 | Mitochondrial 18S ribosomal RNA,...  60.2    1e-08


> ATMG00090.1 | Symbols:  | structural constituent of ribosome;protein 
binding | chrM:25482-28733 REVERSE LENGTH=1671
Length=1671

 Score = 71.3 bits (38),  Expect = 5e-12
 Identities = 40/41 (98%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  54   GAACGATCTTCGCTTCGCGGGAACAACTAAAACCACCATCT  94
            ||| |||||||||||||||||||||||||||||||||||||
Sbjct  951  GAATGATCTTCGCTTCGCGGGAACAACTAAAACCACCATCT  991


> ATMG01390.1 | Symbols: RRN18 | Mitochondrial 18S ribosomal RNA, 
which is a component of the 30S small subunit of mitochondrial 
ribosome. The rRNA is degraded by a polynucleotide phosphorylase-like 
protein (AtmtPNPase). | chrM:361350-363284 REVERSE 
LENGTH=1935
Length=1935

 Score = 60.2 bits (32),  Expect = 1e-08
 Identities = 32/32 (100%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  26   GTCTCGCCCAGGAGGCGGGAAGAGTTGAGAAC  57
            ||||||||||||||||||||||||||||||||
Sbjct  131  GTCTCGCCCAGGAGGCGGGAAGAGTTGAGAAC  162



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5