BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940872
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14030.1 | Symbols: | translocon-associated protein beta (T... 968 0.0
> AT5G14030.1 | Symbols: | translocon-associated protein beta
(TRAPB) family protein | chr5:4526784-4528615 FORWARD LENGTH=1044
Length=1044
Score = 968 bits (524), Expect = 0.0
Identities = 596/630 (95%), Gaps = 7/630 (1%)
Strand=Plus/Plus
Query 6 CGTCGGAGATCACAAACCATGGCCATCGCGT-TAGCTAAGCTTCTGATCTCCGCCATGGT 64
||||| ||||| |||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 77 CGTCGTAGATCGCAAACCATGGCCGTCGC-TGTAGCTAAGCTTCTGATCTCCGCCATGGC 135
Query 65 GGTATTCATGCTTGTTTCTGCTTCGTTTGCGACCTCGGAAGTTCCGTTCATGGTGGTTCA 124
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 136 GGTTTTCATGCTTGTTTCTGCTTCGTTCGCGACCTCGGAAGTGCCGTTCATGGTGGTTCA 195
Query 125 CAAGAAAGCCACTCTCAACAGGCTCAAATCTGGCGCCGAACGCGTCTCCGTTTCCTACGA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 CAAGAAAGCCACTCTCAACAGGCTCAAATCTGGCGCCGAACGCGTCTCCGTTTCCTACGA 255
Query 185 CATCTATAACCAAGGATCCTCGACGGCGTATGATGTGACTCTGACAGATAATAGCTGGGA 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 256 CATCTATAACCAAGGATCCTCGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGA 315
Query 245 TAAAGCTACTTTTGAGGTTGTTAATGGAAACACTTCGAAATCATGGGAAAGGCTTGATGC 304
|||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 316 TAAAAAGACTTTTGAAGTTGTTAATGGAAACACTTCAAAATCATGGGAAAGACTTGATGC 375
Query 305 AGGAGGTAT-CTTGTCTCATTCTTTCGAACTGGAGGCCAAGGTTAAAGGAGTCTTCTACG 363
||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 376 AGGAGGTATTCT-GTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACG 434
Query 364 GTGCCCCTGCTGTCGTTACTTTCCGTATCCCCACAAAGCCAGCTCTTCAGGAAGCGTACT 423
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 435 GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGGAAGCATACT 494
Query 424 CGACTCCACTACTACCTCTAGACATCCTCGCAGACAAACCTCCAACGAAAATTTTGGATG 483
| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 495 CAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACG 554
Query 484 TGGCCAAGAGGTTGCTGGCAAAATATGGATCACTCGTCTCCGTGATCTCCATGGTGGTTT 543
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TGGCCAAGAGGTTGCTGGCGAAATATGGATCACTCGTCTCCGTGATCTCCATGGTGGTTT 614
Query 544 TGTT-CATATACTTGGTGGCAACACCTAAGTCCAACGTATCAAAGACAAGCAGCAAGAAG 602
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 615 -GTTTCATATACTTGGTGGCAACACCTAAGTCCAACGTATCAAAGGCAAGCAGCAAGAAG 673
Query 603 AAGCGTTAAGTTAGTGAAATGAA-GGTGAG 631
||||||||||||||||||||||| ||||||
Sbjct 674 AAGCGTTAAGTTAGTGAAATGAAAGGTGAG 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5