BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940877
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2863 0.0
> AT5G14080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4543101-4545256 REVERSE LENGTH=2069
Length=2069
Score = 2863 bits (1550), Expect = 0.0
Identities = 1802/1927 (94%), Gaps = 4/1927 (0%)
Strand=Plus/Plus
Query 21 ATGAGACCTGCGGCGGAGCTTGCGGTGAGGATTGGCTGTGAGCTTCTAAAAGTTTCCGGA 80
|||||||||||| ||||||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 1 ATGAGACCTGCGACGGAGCTTGCGGTGAGGATCGGCCGAGAGCTGCTAAAAGTTTCCGGA 60
Query 81 AGCTCTCGATCAGCTCGGATATGGAGTCCATCGGTTGAACAGAGCCTTCACGGTCTCGGT 140
||||||||| | ||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 61 AGCTCTCGAGCTGCTCGGATATGGAGTCCATTGATTGAACAGAGTCTTCACGGTCTCGGT 120
Query 141 TTTCGTCACTCAATAAGCCCTTCGCTTGTGGCTCGAGTCATAGACCCGTTTCTCCTGAAC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TTTCGTCACTCAATAAGCCCTTCGCTTGTGGCTCGAGTCATAGACCCGTTTCTGCTGAAT 180
Query 201 CACCACTCCCCCGCTCTCGGTTTCTTCAATTGGGCTGCTCAACAACCTGGTTACTCTCAC 260
|| || || | ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 CATCATTCTCTTGCTCTCGGTTTCTTCAATTGGGCTGCTCAGCAACCAGGTTACTCTCAC 240
Query 261 GACTCCGTCTCTTACCATTCTATCTTCAAGTCTCTTTCGCTTTCTCGTCAGTTCTCCGCC 320
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACTCCATATCTTACCACTCTATCTTCAAGTCTCTTTCGCTTTCTCGTCAGTTCTCCGCC 300
Query 321 ATGGACGCTCTCTTCAAACAGGTCAAATCGAACAAAATCCTTCTCGATTCTTCCGTGTAT 380
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGACGCTCTTTTCAAACAGGTTAAATCGAACAAAATCCTTCTCGATTCTTCCGTGTAT 360
Query 381 CGCTCCCTCATTGATGCGCTAGTGTTGGGTAGGAAATCTCAGAGTGCGTTTTGGGTTTTA 440
||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 361 CGCTCCCTCATTGATACGCTTGTGCTGGGTAGGAAAGCTCAGAGTGCGTTTTGGGTTTTA 420
Query 441 GAAGAAGCTCTTTCGACGGGT-AGGGAGATTCATCCCGATGTTTGCAATCGTCTTTTGGC 499
||||||||| |||| |||||| | |||||||||||||||||| |||||||||||||| ||
Sbjct 421 GAAGAAGCTTTTTCAACGGGTCA-GGAGATTCATCCCGATGTATGCAATCGTCTTTTAGC 479
Query 500 TGCTTTAACTTCTGATGGGTGTTTTGATTATGCACAGAAACTGTTTGTTAAAATGCGCCA 559
|| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 480 TGGTTTAACTTCTGATGGATGTTATGATTATGCACAGAAACTGTTTGTTAAAATGCGTCA 539
Query 560 -AAGAGGTGTTTCTTTGAATACTCTTGGCTTCGGCGTTTATATAGGAAGTTTTTGTACAA 618
|| ||||||||| ||||| |||||||| ||||| || ||||||||| | || |||| ||
Sbjct 540 TAA-AGGTGTTTCGTTGAACACTCTTGGATTCGGTGTCTATATAGGATGGTTCTGTAGAA 598
Query 619 GTTCTGAAACGGATCAGCTCTTGAGATTGGTGGATGAGGTTAAAAAGGCTAACTCGAACA 678
||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 599 GTTCTGAAACGAATCAGCTCTTGAGATTGGTGGATGAGGTTAAAAAGGCTAATTTGAATA 658
Query 679 TCAATGGCTCCATTATTGCACTGTTGATTCTCCATGGTCTTTGTAAGTCTTCTCGACAAA 738
|||||||||| || ||||||||||||||||||||| |||||||||||| ||| ||| |||
Sbjct 659 TCAATGGCTCAATCATTGCACTGTTGATTCTCCATAGTCTTTGTAAGTGTTCACGAGAAA 718
Query 739 TGGATGCTTTTTATATTTTGGAAGAGCTGAGAAACATAGATTGCAAACCGGATTTTATGG 798
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 719 TGGATGCTTTTTATATATTGGAAGAGCTAAGGAACATAGATTGCAAACCGGATTTTATGG 778
Query 799 CTTATAGAATCATAGCTGAAGCATTTGTAGTTACTGGGAATTTGTATGAGAGACAAGTCG 858
||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| || |
Sbjct 779 CTTATAGGGTCATAGCTGAAGCGTTTGTAGTTACTGGGAATCTGTATGAGAGACAGGTTG 838
Query 859 TTCTAAAGAAGAAGAGAAAGCTCGGAGTAGCACCCAGGAGCAGCGATTACCGAGCTTTCA 918
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 839 TTTTAAAGAAGAAGAGAAAGCTCGGAGTAGCACCTAGGAGCAGCGATTACCGAGCTTTTA 898
Query 919 TACTGGATTTGATTTCCGCTAAAAGATTAATGGAGGCTAAGGAAGTAGCTGAGGTGATTG 978
| |||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 899 TTCTGGATTTGATTTCAGCTAAGCGATTAACGGAGGCTAAGGAAGTGGCTGAGGTGATTG 958
Query 979 TGAGTGGAAATTTCCCCATGGATAATGATATCTTAGACGCGTTAATTGGATCAGTCTCTG 1038
|||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 959 TGAGTGGAAAATTCCCTATGGATAATGATATCTTAGACGCGTTGATTGGATCTGTCTCTG 1018
Query 1039 CAGTTGATCCAGATTCTGCTGTTGAATTCTTAGTTTACATGGTCAGCACAGGGAAATTGC 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAGTTGATCCAGATTCTGCTGTTGAATTCTTAGTTTACATGGTCAGCACAGGGAAATTGC 1078
Query 1099 CTGCTATTCGGACTCTGAGCAAATTGAGTAAGAATCTCTGCAGGCACGACAAGAGCGACC 1158
|||||||||||||||||||||| || ||||||||||| |||||||| |||||||| || |
Sbjct 1079 CTGCTATTCGGACTCTGAGCAAGTTAAGTAAGAATCTTTGCAGGCATGACAAGAGTGATC 1138
Query 1159 ATCTGATAAAGGCTTATGAGCTTTTGTCAAGCAAAGGTTATTTCTCAGATCTTGAGAGTT 1218
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1139 ATCTGATAAAGGCTTATGAGCTTTTGTCAAGCAAAGGTTATTTCTCAGAACTTCAGAGTT 1198
Query 1219 ACAGTCTGATGATATCGTTCTTGTGCAAGGCCGGGAGAGTCAGAGAAGGTTACACTGCTC 1278
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1199 ACAGTCTGATGATATCGTTCTTGTGCAAGGCTGGGAGAGTCAGAGAAAGTTACACTGCTC 1258
Query 1279 TGCACGAAATGAAGAAGAAAGGGCTTGATCCAGATGTGTCACTCTATAACGCTCTCATTG 1338
|||| |||||||||||| ||||||||| |||||| || ||||||||||||||||||||||
Sbjct 1259 TGCAAGAAATGAAGAAGGAAGGGCTTGCTCCAGACGTTTCACTCTATAACGCTCTCATTG 1318
Query 1339 ATGCTTGCTGCAGAGCGGAAATGATCCGTCCAGCAAAGAAACTGTGGGATGAGATGTTTG 1398
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AAGCTTGTTGCAAAGCGGAAATGATCCGTCCAGCAAAGAAACTGTGGGATGAGATGTTTG 1378
Query 1399 TGGAGGGCTGCAAAATGAATCTGACGACATATAATGTACTTATTAGGAAATTATCAGAAG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1379 TGGAGGGCTGCAAAATGAATCTGACGACATATAATGTACTTATTAGGAAATTATCAGAGG 1438
Query 1459 AAGGCGAGGCAGAGGAGTCTTTGAGGCTGTTTCAGAAGATGCTTGAGAAAGGGATAGACC 1518
|||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||| |
Sbjct 1439 AAGGCGAGGCAGAGGAGTCTTTAAGGCTGTTTGACAAGATGCTTGAGAGAGGGATAGAAC 1498
Query 1519 CAGATGAAACAATCTATATGTCACTCATTGAAGGCCTATGCAAGGAGACAAAACTTGAAG 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1499 CAGATGAAACAATCTATATGTCACTCATTGAAGGCCTATGCAAGGAGACAAAAATTGAAG 1558
Query 1579 CTGCTTTGGAAGTCTTCAGAAAGTGCATGGAGAGGGATAATAAAACAGCTGCAAGAAGAG 1638
||||| ||||||| |||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 1559 CTGCTATGGAAGTTTTCAGAAAGTGCATGGAGAGGGATCATAAAACAGTTACAAGAAGAG 1618
Query 1639 TATTAAGCGCGTTTGTATTAAATCTATGCAGCAACGGCCATTTTAGTGAGGCATCGCAGC 1698
||||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1619 TATTAAGCGAGTTTGTCTTAAATCTATGCAGCAACGGCCATTCTGGTGAGGCATCGCAGC 1678
Query 1699 TGCTGCGCGAGAAAGAACACTTAAAACACACAAGTGCACATGTTGTGTTGCTGAAATGTG 1758
|||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||
Sbjct 1679 TGCTGCGCGAGAGAGAACACTTAGAACACACAGGAGCACATGTCGTGTTGCTGAAATGTG 1738
Query 1759 TGGCGGATGCGAAAGAGGTTGAGATTGGAATCAGACATATGAAATGGATCAAAGAGGTAT 1818
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1739 TGGCGGATGCGAAAGAGGTTGAGATTGGAATTAGACATATGCAATGGATCAAAGAGGTAT 1798
Query 1819 CGCCGTCTCTTGTTCACACAATATCTTCTGACCTGTTGGCGTCTTTCTGTTCATCATCTG 1878
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 CGCCATCTCTTGTTCACACAATATCTTCTGACCTGTTGGCGTCTTTCTGTTCATCATCTG 1858
Query 1879 ATCCTGATTCCATTCTTCCATTTATTCGAGCAATTGAGCACACATAATTACACCAATAGG 1938
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1859 ATCCTGATTCCATTCTTCCATTTATTCGAGCAATTGAGAACACATAATTACACCAATAGG 1918
Query 1939 CTATTAG 1945
| |||||
Sbjct 1919 CAATTAG 1925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96334845855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5