BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940881
Length=253
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14110.1 | Symbols: | Protein of unknown function (DUF 3339... 361 2e-99
> AT5G14110.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:4553806-4554382 REVERSE LENGTH=577
Length=577
Score = 361 bits (195), Expect = 2e-99
Identities = 225/240 (94%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 12 TATATTGGAATGGGGTTGAATTGGGGACCAGTCTTAATGTCGGTGGTTCTGTTCATCGTA 71
||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 198 TATATTGAAATGGTGTTGAATTGGGGACCAGTCTTAATGTCGGTATTTCTGTTCATCGTA 257
Query 72 TTGACGCCCGGAGTATTGTTTCAGTTTCCGGGGAAGACCAAAGTGGTTGAGTTTGGCGGT 131
|||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 258 TTGACGCCTGGAGTATTGTTTCAGCTTCCAGGGAAGACCAAAGTGGTTGAGTTTGGCGGC 317
Query 132 TTTCAGACAGGCGGCGCAGCCATTGTCATCCACACCCTTATCTTCTTTGCGTGCATTACA 191
||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 318 TTTCAAACAAGCGGCGCAGCCATTGTCATCCACACTCTTATCTTCTTTGCGTGCATTACA 377
Query 192 GTCTCCCTTATCGCTCTTCATATCCACATCTACGTTGCCTAATTAATTTAACATTTAATT 251
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 378 GTCTCTATTATCGCTCTTCATATCCACATCTATGTTGCCTAATTAATTTAACATTTTATT 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11511314521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5