BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940884
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14140.1 | Symbols: | zinc ion binding;nucleic acid binding... 1251 0.0
> AT5G14140.1 | Symbols: | zinc ion binding;nucleic acid binding;zinc
ion binding | chr5:4561464-4563671 FORWARD LENGTH=1028
Length=1028
Score = 1251 bits (677), Expect = 0.0
Identities = 773/820 (94%), Gaps = 4/820 (0%)
Strand=Plus/Plus
Query 3 TGCTCAGCT-CCGGAGGCGATGGCTATGGGTATGGCAGTAGACACGGTAGGCGAGTTAGG 61
||||||| | ||||| |||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 58 TGCTCAG-TGCCGGAAGCGATGGCTACGGGTATGGCGGTAGATACGGTAGGCGAGTTAGG 116
Query 62 CTTTCCGTATTGGAATCCAATCCGACGAAGATTTTCTCCCGATTCGCCTTTCTTTGCATC 121
||||||||| ||||| |||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 117 CTTTCCGTACTGGAACCCAATCCGACGAAGATTTCCTCCGGATTCGCCGTTCTTTGCATC 176
Query 122 TGGAAATGTCGAGCGAGAGCTACTTGCTAAACAGGTGGCATTGGACTTAACAGAAGATGA 181
||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 177 TGGAAATGTCGAGCGCGAGCTACTTGCTAAACAGGTGACATTGGACTTCACAGAAGATGA 236
Query 182 AATCAACCATCTGCAGAAATTTGTGGAAACTGAAAGCAGAAGAATCTCGTGTCCCATTGT 241
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 237 AATCAACCATCTGCATAAATTTGTGGAAATTGAAACCAGAAGAATCTCGTGTCCCATTGT 296
Query 242 TGGCTGCCCTGTGCGCCTGAAATCTTTGGACCATTTTGAAGATCACTATAACGCACGGCA 301
|||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 TGGCTGTCCTGAACGCCTGAAATCTTTGGACCATTTTGAAGATCACTATAATGCACGGCA 356
Query 302 CACTGCGTCTTGTTCAGTATGCTCAAGGGTCTACCCTACTTCTCGCTTACTAAGTATTCA 361
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CACTGCCTCTTGTTCAGTGTGCTCAAGGGTCTACCCTACTTCTCGCTTACTAAGTATTCA 416
Query 362 TATATCCGAAGCACATGACTCTTTCTTTCAAGCTAAAGTTGCTCGGGGTTATGACATGTA 421
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 417 CATATCCGAAGCACACGACTCTTTCTTTCAAGCTAAAGTTTCTCGGGGTTATGACATGTA 476
Query 422 CGAGTGCCTCGTGGAAGGGTGTGGATTGAAGTTCAAGAGCTACAAAGCCCGGCATCGACA 481
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 477 TGAGTGCCTTGTGGAAGGGTGTGGATTGAAGTTCAAGACCTACAAAGCCCGGCATCGACA 536
Query 482 CTTAATTGACAAACACAAGTTCCCATCGACATTTGAGTTCTTCAAGAAGACCCAACTCTC 541
||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 537 CTTGATTGACAAACACAAGTTCCCAACGACATTTGAATTCTTCAAGAAGACCCAACTCTC 596
Query 542 AAAGAAACGAAGAGAGAAACTTCAAAGGCAACATGTACCAAGGCTGAAACATGAAGATGA 601
|||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||| ||
Sbjct 597 AAAGAAGCGTAGAGAGAAACTTCAAAGGCAACATGTATCAAAGCTGAAACATGAAGAAGA 656
Query 602 CAAAGAAGCTGCTTCGTCAGATGCCATGGAAGTGGAAGACAAATCCAGCGTAGACGGTCT 661
||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 657 CAAAGAAGCTGCTTCGTCAGATGCCATGGAAGTAGAAGACAAAGGCAGCTTAGACGGTCT 716
Query 662 TGTTTCAGCACTGTCCACGCTAACTACCTCAGACACAACTCCTTCGAATGTCAGCTTCGG 721
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGTTTCAGCACTGTCCTCGCTAACTACCTCAGACACAACTCCTTCGAATGTCAGCTTCGG 776
Query 722 TCGACGCCATGGTCGTGGGCTGACCTTTGTCCCACGGTCTGTTCATA-AGGAGAAACGGA 780
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 777 TCGACGCCATGGTCGTGGGCTGACCTTTGTTCCACGGTCTGTTCATAGAG-AGAAACGGA 835
Query 781 CCGAATCTTCGTCTGCACCAGGGCCAACGAATTAGTCATG 820
|||||||||||||||||||||| ||||| |||||||||||
Sbjct 836 CCGAATCTTCGTCTGCACCAGGACCAACTAATTAGTCATG 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40689659070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5