BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940891

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38310.1 | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:160500...   322    1e-87


> AT2G38310.1 | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:16050063-16051168 
FORWARD LENGTH=1106
Length=1106

 Score =  322 bits (174),  Expect = 1e-87
 Identities = 205/220 (93%), Gaps = 2/220 (1%)
 Strand=Plus/Plus

Query  10   AGATTCCGATGATGATCGCGTCGTTCCAAAAACTTTTTCCTTCTCTCTCACGCGACCCCA  69
            ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||
Sbjct  241  AGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTTCTCTCTCACGCGACTCCA  300

Query  70   TGGCCGCTCGTTTTCACACACACGAGGTTGATCCTAACCAGTGTTGCTCTGCTGTTATTC  129
             ||||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||
Sbjct  301  CGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAATCAGTGTTGCTCCGCCGTTATTC  360

Query  130  ACGAGATCTCCGCTCTAATATCCACCGTTTGGTCTGTCGT-CTGCCGCTTTGATAACCCA  188
            | ||||||||||||| ||| |||||||||||||| ||||| | |||||||||||||||||
Sbjct  361  AAGAGATCTCCGCTCCAATCTCCACCGTTTGGTCCGTCGTAC-GCCGCTTTGATAACCCA  419

Query  189  CAAGCTTACAAACACTTTCTCAAAAGCTGCAGCGTCATCG  228
            ||||||||||||||||||||||||||||| ||||||||||
Sbjct  420  CAAGCTTACAAACACTTTCTCAAAAGCTGTAGCGTCATCG  459


 Score =  132 bits (71),  Expect = 2e-30
 Identities = 89/97 (92%), Gaps = 3/97 (3%)
 Strand=Plus/Plus

Query  227  CGTCATTTTCTTGATTTTTAGCCATCGTGTGATCTATGtttttttCTGGTTTATGTGTG-  285
            |||| |||||| ||||||||||| |||||||||||||| ||||||| || ||||||||| 
Sbjct  852  CGTCGTTTTCTAGATTTTTAGCCGTCGTGTGATCTATG-TTTTTTC-GGCTTATGTGTGA  909

Query  286  AAAAAATGTTACATTAGTGAATTAATCTCTCATGCAT  322
            |||||| ||||||||||||||||||||||||||||||
Sbjct  910  AAAAAAAGTTACATTAGTGAATTAATCTCTCATGCAT  946



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5