BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940897

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47520.1 | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5...   339    1e-92


> AT5G47520.1 | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog 
A5A | chr5:19277361-19279736 REVERSE LENGTH=1298
Length=1298

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 194/199 (97%), Gaps = 2/199 (1%)
 Strand=Plus/Plus

Query  57   CACACTCTGAT-T-AATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT  114
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  CACACTCTGATATGAATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT  797

Query  115  TGAGAGAAGTGTCAACAGCGGAAGGGAAGTCATTGGCTGAAGCACAAGGTCTTTTCTTCA  174
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  798  TGAGAGAAGTGTCAACAGCGGAAGGGAAGGCATTGGCTGAAGCACAAGGTCTTTTCTTCA  857

Query  175  TGGAGACATCGACTTTGGACTCATCAAACGTGGCAGCTGCGTTTGAGACGGTTGTGAAGG  234
            ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  858  TGGAGACATCGGCTTTGGACTCATCAAACGTGGCAGCTGCATTTGAGACGGTTGTGAAGG  917

Query  235  AGATATACAACATACTGAG  253
            |||||||||||||||||||
Sbjct  918  AGATATACAACATACTGAG  936



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13019346991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5