BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940917

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04140.2 | Symbols: GLU1, GLS1, GLUS, FD-GOGAT | glutamate s...   220    3e-57


> AT5G04140.2 | Symbols: GLU1, GLS1, GLUS, FD-GOGAT | glutamate 
synthase 1 | chr5:1130031-1138438 FORWARD LENGTH=5199
Length=5199

 Score =  220 bits (119),  Expect = 3e-57
 Identities = 133/140 (95%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  1     AGAGTGGTGTTGATGTTCTAATGGCTACAGCTATGGGTGCTGATGAATACGGATTTGGTT  60
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct  3704  AGAGTGGTGTTGATGTTCTAATGGCTGCAGCTATGGGTGCTGATGAATACGGATTCGGTT  3763

Query  61    TCTTGGCAATGATTGCTACTGGTTGTCTTATGGCTCGTATTTGCCACACTAATAATTGTC  120
              ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  3764  CCTTGGCAATGATTGCTACTGGTTGTGTTATGGCTCGTATTTGCCACACTAATAATTGCC  3823

Query  121   TAGTGGATGTAGCAAGTCAG  140
              ||||| |||||||||||||
Sbjct  3824  CAGTGGGTGTAGCAAGTCAG  3843



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10103817549


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5