BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940921
Length=1823
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14430.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2542 0.0
> AT5G14430.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:4652980-4655973
FORWARD LENGTH=2183
Length=2183
Score = 2542 bits (1376), Expect = 0.0
Identities = 1468/1514 (97%), Gaps = 0/1514 (0%)
Strand=Plus/Plus
Query 310 CATCATTGTCCTCCACCAGAACGGCGTTTCAATTGCCTTGTTCCGCCTCCAATTGGTTAT 369
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 458 CATCATTGTCCTCCATCAGAACGGCGTTTCAATTGCCTTGTTCCGCCTCCTGTTGGTTAT 517
Query 370 AAGATTCCGTTAAGGTGGCCTGTGAGTAGAGACGAGGTGTGGAAGGCGAATATCCCGCAC 429
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AAGATCCCGTTAAGGTGGCCTGTGAGTAGAGACGAGGTGTGGAAGGCGAATATCCCGCAC 577
Query 430 ACACACCTTGCTCAAGAGAAATCTGATCAGAATTGGATGGTTGTAAATGGTGATAAGATC 489
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 578 ACACACCTTGCTCAAGAGAAGTCTGATCAGAATTGGATGGTTGTTAATGGTGATAAGATC 637
Query 490 AATTTTCCTGGTGGAGGAACACATTTCCACAACGGAGCTGACAAATACATTGTGTCCCTT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 638 AATTTTCCTGGTGGAGGAACACATTTCCACAACGGAGCTGACAAATACATTGTTTCCCTG 697
Query 550 GCTCAGATGCTGAAATTCCCTGGTGACAAACTCAACAATGGGGGAAGCATTCGGAGTGTT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 698 GCTCAGATGCTGAAATTCCCTGGTGACAAACTCAACAATGGGGGAAGCATTCGGAATGTT 757
Query 610 CTTGATGTTGGTTGCGGGGTAGCTAGCTTCGGGGCCTATCTTCTTTCACATGACATCATA 669
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 758 CTTGACGTTGGTTGTGGGGTAGCTAGCTTCGGAGCCTATCTTCTTTCACATGACATCATA 817
Query 670 GCCATGTCTCTTGCTCCTAATGATGTCCACCAGAACCAGATCCAGTTTGCTCTAGAACGA 729
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GCCATGTCTCTTGCCCCTAATGATGTCCACCAGAACCAGATCCAGTTTGCTCTAGAACGA 877
Query 730 GGGATTCCATCGACGCTTGGTGTTCTTGGGACTAAGCGGCTTCCATACCCAAGCAGATCA 789
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 878 GGGATTCCATCAACACTTGGTGTTCTTGGGACAAAGCGGCTTCCATACCCAAGCAGATCA 937
Query 790 TTTGAACTTGCTCACTGCTCTAGATGTAGGATAGATTGGCTTCAAAGAGATGGGATCTTG 849
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 938 TTTGAACTTGCTCACTGCTCTAGATGTCGGATAGATTGGCTTCAAAGAGATGGGATCTTG 997
Query 850 TTGCTGGAACTTGATAGGTTGCTCAGACCTGGTGGCTACTTTGTCTACTCGTCGCCTGAA 909
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 998 TTACTGGAACTTGATAGGTTGCTCAGACCTGGTGGCTACTTTGTATACTCGTCGCCTGAA 1057
Query 910 GCTTATGCACACGACCCAGAAAACAGAAAGATTGGGAATGCGATGCATGATCTCTTTAAG 969
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1058 GCTTATGCACACGACCCAGAGAACAGAAAGATTGGGAATGCAATGCATGATCTCTTTAAG 1117
Query 970 AGAATGTGTTGGAAGGTCGTGGCTAAACGAGACCAATCTGTTATATGGGGAAAACCAATA 1029
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1118 AGAATGTGTTGGAAGGTCGTGGCCAAACGAGACCAATCTGTTATATGGGGAAAACCGATA 1177
Query 1030 TCCAATAGCTGTTACTTGAAGAGGGATCCGGGTGTCCTGCCTCCGCTTTGTCCTTCTGGA 1089
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TCCAACAGCTGTTACTTGAAGAGGGATCCGGGTGTCCTGCCTCCGCTTTGTCCTTCTGGA 1237
Query 1090 GATGACCCAGATGCAACTTGGAATGTCTCAATGAAGGCTTGCATATCTCCTTACTCAGTG 1149
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1238 GATGACCCAGATGCAACTTGGAATGTCTCAATGAAGGCTTGCATATCACCTTACTCAGTG 1297
Query 1150 AGGATGCACAAAGAAAGATGGAGTGGACTCGTTCCCTGGCCACGGAGGCTGACAGCTCCT 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 AGGATGCACAAAGAAAGATGGAGTGGACTCGTTCCCTGGCCACGGAGGCTGACAGCTCCT 1357
Query 1210 CCACCACGTCTTGAAGAAATTGGTGTCACTCCTGAGCAATTCCGTGAAGATACGGAAACA 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 CCACCACGTCTTGAAGAAATTGGTGTCACTCCTGAGCAATTCCGTGAAGATACGGAAACA 1417
Query 1270 TGGCGGCTTAGAGTGATAGAATACTGGAAACTGCTAAAACCAATGGTGCAAAAGAACTCC 1329
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1418 TGGCGGCTTAGAGTGATAGAATACTGGAAACTGCTGAAACCAATGGTGCAAAAGAACTCC 1477
Query 1330 ATAAGAAACGTGATGGACATGAGCTCAAACCTTGGCGGTTTCGCAGCTGCTCTAAACGAT 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 ATAAGAAACGTGATGGACATGAGCTCAAACCTTGGCGGTTTCGCAGCTGCTCTAAACGAT 1537
Query 1390 AAAGATGTATGGGTAATGAATGTTATGCCCGTTCAATCCTCTCCGAGAATGAAGATCATC 1449
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1538 AAAGATGTATGGGTAATGAATGTCATGCCCGTTCAATCCTCTCCAAGAATGAAGATCATT 1597
Query 1450 TACGACCGTGGCCTTATCGGAGCGACTCATGATTGGTGTGAAGCCTTTGACACATACCCA 1509
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1598 TACGACCGTGGCCTTATCGGAGCCACTCATGATTGGTGTGAAGCCTTTGACACATACCCA 1657
Query 1510 CGAACGTTTGATCTTATCCACGCATGGAACACGTTCACAGAAACCCAAGCACGTGGATGC 1569
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1658 CGAACGTTTGATCTTATCCACGCATGGAACACCTTCACAGAAACCCAAGCACGTGGATGC 1717
Query 1570 AGCTTTGAAGATCTGCTTATCGAGATGGATCGGATACTACGACCAGAAGGATTTGTCATA 1629
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1718 AGCTTTGAAGATCTGCTTATCGAGATGGATCGGATACTACGCCCAGAAGGATTTGTCATA 1777
Query 1630 ATTCGTGACACAACAGACAATATTAGCTACATCAAGAAGTATCTTACATTGTTGAAATGG 1689
|||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1778 ATTCGTGACACAACTGACAATATTAGCTATATCAAGAAGTATCTGACATTATTGAAATGG 1837
Query 1690 GATAAATGGTCCACAGAGACAACTCCAAAAGGTGATTCTCTGTCGACCAAAGACGACAAA 1749
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 1838 GATAAATGGTCCACAGAGACAACTCCAAAAGGTGATCCTCTGTCGACCAAAGACGAGATA 1897
Query 1750 GTTTTGATCGCCAGAAAGAAACTTTGGAGCGTGCCCGCCAATTCAGCATCGTGAAATCTA 1809
|||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||
Sbjct 1898 GTTTTGATCGCCAGAAAGAAACTTTGGAGCTTGCCCGCCATTTCAGTGTCCTGAAATCTA 1957
Query 1810 ACAGGCAACATGCG 1823
|||| ||||| |||
Sbjct 1958 ACAGTCAACAGGCG 1971
Score = 418 bits (226), Expect = 1e-115
Identities = 261/278 (94%), Gaps = 2/278 (1%)
Strand=Plus/Plus
Query 1 CCGGATCCGGCGACGCTGAGTATGAAACACTTCAGAACTGAGCGAGTCCGTCCGACTCCG 60
|||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 92 CCGGATCCGGAGACGCTGAGAATGAAACACTTCAGAACTGAGCGAGTCCGTGCGACTCCG 151
Query 61 AAGCTCTTCACTTACGTTCTCGTCGGTTTCATCGCTCTACTTGGCCTGACTTGCCTCTAC 120
||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 152 AAGCTCTTCACCTACGTTCTCGTCGGTTTCATCGCTCTACTCGGCTTGACTTGCCTCTAC 211
Query 121 TACGGCTCTTCCTTCGCTCCCGGATCCAGAAAGTCCGATGAGTTTGATGGATCTAATCAC 180
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 212 TACGGCTCTTCGTTCGCTCCCGGATCCAGAAAGTCCGATGAGTTCGATGGATCTAATAAC 271
Query 181 CGCGTTCGCACCGGAATCGGATCCGCGAGGAATCGAGATAGTGTGCTTGCAGTGAGCCTT 240
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 272 CGCGTTCGCACCGGAATCGGATCCTTGAGGAATCGAGATATTGTGCTTGCAGTGAGCCGT 331
Query 241 TTCGAAGTTCCTAAAAGTGTTCCGGT-TCGTGAATCGA 277
|||||||||||||||||||||||| | | |||| ||||
Sbjct 332 TTCGAAGTTCCTAAAAGTGTTCCGATAT-GTGATTCGA 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90210379365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5