BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940923
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14450.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1923 0.0
> AT5G14450.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:4658441-4660175 FORWARD LENGTH=1358
Length=1358
Score = 1923 bits (1041), Expect = 0.0
Identities = 1156/1211 (95%), Gaps = 9/1211 (1%)
Strand=Plus/Plus
Query 6 TGTTTCGTTACTCGCAATGAAGAATAATCTCGATAGAGCAAAACTTATGGTTTCTTCTGC 65
|||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |
Sbjct 32 TGTTTCGTTACTCGCAATGAAGGATAATCTTGAAAGAGCAAAACTTATGGTTTCTTCTAC 91
Query 66 TGTGTTTTCATGG------C--T-TCTCTTTACAGTAACAACCGCTGTTTCAGTTCAGCC 116
||||||||||||| | | ||||||| |||| ||||| ||||||||||||||||
Sbjct 92 TGTGTTTTCATGGCTTCTTCTGTGTCTCTTTGCAGTGACAACATCTGTTTCAGTTCAGCC 151
Query 117 GACGTGTACTTTCCCGGCGATTTACAACTTCGGAGATTCTAATTCCGACACTGGAGGAAT 176
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 152 TACGTGTACTTTTCCGGCGATTTACAACTTCGGAGATTCTAATTCCGACACTGGAGGTAT 211
Query 177 CTCCGCCGCTTTTGAGCCTATTAGGGATCCTTACGGTCAAGGTTTCTTCCACAGACCCGC 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 212 CTCCGCCGCTTTTGAGCCTATTAGGGATCCTTACGGTCAAGGTTTCTTCCACAGACCCAC 271
Query 237 CGGACGAGACTCCGATGGCCGTCTCACCATTGATTTCATAGCTGAGCGTCTGGAGTTACC 296
|||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 272 CGGAAGAGACTCCGATGGCCGTCTCACCATTGATTTCATTGCTGAGCGTCTGGGGTTACC 331
Query 297 GTATTTGAGTGCATACTTAAACTCGTTAGGATCAAACTTCAGACATGGAGCAAACTTTGC 356
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GTATTTGAGCGCATACTTAAACTCGTTAGGATCAAACTTCAGACATGGAGCAAACTTTGC 391
Query 357 GACAGGTGGTTCAACCATAAGAAGACAGAACGAAACTATCTTTCAATACGGCATTAGTCC 416
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 392 AACAGGTGGTTCAACCATAAGAAGACAGAACGAAACTATCTTTCAATATGGCATTAGTCC 451
Query 417 ATTCTCTCTCGATATGCAGATTGCTCAATTCGATCAATTCAAAGCAAGATCCGCACAACT 476
|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||
Sbjct 452 ATTCTCTCTCGATATGCAGATTGCTCAATTCGATCAGTTCAAAGCCAGATCTGCACTACT 511
Query 477 GTTCTCACAAATTAAGAGTAGATATGATAGAGAGAAGCTTCCAAGACAGGAAGAGTTTGC 536
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CTTCACACAAATTAAGAGTAGATATGATAGAGAGAAGCTTCCAAGACAGGAAGAGTTTGC 571
Query 537 AAAAGCTTTGTATACTTTTGATATTGGACAGAATGATCTCTCTGTTGGGTTTCGGACAAT 596
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AAAGGCTTTGTATACTTTTGATATTGGACAGAATGATCTCTCTGTTGGGTTTCGGACAAT 631
Query 597 GAGCGTCGATCAACTTAAGGCGACAATACCCGACATTGTCAGCCATTTAGCTTCTGCTGT 656
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 632 GAGCGTCGATCAACTTAAGGCGACGATACCCGACATTGTCAACCATTTAGCTTCTGCTGT 691
Query 657 CCGGAACATATATCAGCAAGGAGGAAGAACATTTTGGGTACACAACACGGGTCCTTTCGG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CCGGAACATATATCAGCAAGGAGGAAGAACATTTTGGGTACACAACACGGGTCCTTTCGG 751
Query 717 TTGTTTACCCGTGAACATGTTTTACATGGGCACTCCTGCACCGGGCTACTTGGACAAATC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTGTTTACCCGTGAACATGTTTTACATGGGCACTCCTGCACCGGGCTACTTGGACAAATC 811
Query 777 TGGCTGCGTGAAGGCTCAAAATGAAATGGCGATGGAGTTCAACAGGAAGCTCAAGGAAAC 836
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 812 TGGCTGCGTGAAGGCTCAAAATGAAATGGCGATGGAGTTCAACAGAAAGCTCAAGGAAAC 871
Query 837 AGTAATCAATCTCAGGAAAGAACTCACTAAAGCAGCCATCATATATGTTGATGTCTACAC 896
||||||||||||||| |||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 872 AGTAATCAATCTCAGAAAAGAACTCACTCAAGCAGCCATTACATATGTTGATGTCTACAC 931
Query 897 TGCGAAATATGAAATGATGAGCAATCCCAAGAAACTAGGATTTGCAAACCCGTTGAAGGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 932 TGCGAAATATGAAATGATGAGCAATCCCAAGAAACTAGGATTTGCAAACCCCTTGAAGGT 991
Query 957 ATGTTGCGGCTACCATGAGAAGTATGATCACATCTGGTGTGGGAACAAAGGGAAAGTGAA 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 992 ATGTTGCGGCTACCATGAGAAGTATGATCACATCTGGTGTGGAAACAAAGGGAAAGTGAA 1051
Query 1017 CAATACCGAAATATACGGTGGCTCTTGTTCCAACCCTGCAATGGCTGTGAGCTGGGATGG 1076
|||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct 1052 CAATACCGAAATCTACGGTGGCTCTTGTCCCAACCCGGTAATGGCTGTGAGCTGGGATGG 1111
Query 1077 AGTTCACTATACCGAAGCAGCAAACAAGCATGTGGCTGACCGTACTCTCAGTGGTTTGCT 1136
|||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 1112 AGTTCACTATACGGAAGCTGCAAACAAGCATGTGGCTGACCGTACTCTAAATGGTTTGCT 1171
Query 1137 CACAGACCCTCCAGTTCCAATAACTCGAGCTTGTTATAGACAGTGAGATTTAGTAGAAGA 1196
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1172 CACAGACCCTCCAGTTCCAATAACCCGAGCTTGTTATAGACAGTGAGATTTAGTAGAAGC 1231
Query 1197 ACTTGATGAAC 1207
|| |||||||
Sbjct 1232 GCTAGATGAAC 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5