BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940928

Length=1153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G11851.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   196    3e-49


> AT2G11851.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:4785982-4790030 
FORWARD LENGTH=1373
Length=1373

 Score =  196 bits (106),  Expect = 3e-49
 Identities = 272/348 (78%), Gaps = 28/348 (8%)
 Strand=Plus/Plus

Query  250  TATATATGCACAAGTATCCAGACCCAAGCCCACGGTGGTTCGTCCTCCA-CCCCGTGCAA  308
            |||||||||| | | ||| | | ||||||||| |||||||||||| ||| |||| |||||
Sbjct  378  TATATATGCAGATGCATCAAAATCCAAGCCCATGGTGGTTCGTCCACCACCCCCATGCAA  437

Query  309  CGTCGGCTGAAACCGGT-GAATC---C---AG-CC---CC-GGTAGCAGGATCCTGTTTC  356
            |||| ||| ||||||||  ||||   |    | ||   ||  | | ||||||  ||||||
Sbjct  438  CGTCTGCTCAAACCGGTCCAATCGAGCTTGTGTCCTTTCCTTGAATCAGGATTATGTTTC  497

Query  357  GTGCA-G-ACGGCTTGGGGGATCTATACTATCGGTGGACTCATGAACGGCAAACCCACAT  414
            ||| | | | || ||| || ||||| | |||  |||||||||||||||||||||||||||
Sbjct  498  GTG-AGGTA-GGATTGCGGAATCTACATTATTTGTGGACTCATGAACGGCAAACCCACAT  555

Query  415  CGGAAGTCACGTTTTTT-GATTGTAC-CGATCAC-CAAGTGTGCCGCGTTGCGCCCATGA  471
            |||||||| | ||| || || ||||  | | ||| ||| ||  |||| || | |||||||
Sbjct  556  CGGAAGTC-C-TTTATTCGACTGTATACAA-CACACAA-TGCACCGCCTTACCCCCATGA  611

Query  472  AGGTAGCTCGAAGCGGAGCATCGGCATGCTTGATAGACAGGCA-GAAGATATACGTGTTT  530
            || | ||| ||||| |||||||| || ||||| ||||| |||| ||||||||||||||||
Sbjct  612  AGATGGCTTGAAGCCGAGCATCGACAAGCTTGGTAGAC-GGCAAGAAGATATACGTGTTT  670

Query  531  GGAGGGTGCTGGGATGATGTCGCCGCTGATTCCTCTAACTGGGTAGAG  578
            ||| ||| ||||||  |||| |  ||||||||||| ||||| ||||||
Sbjct  671  GGAAGGTACTGGGA--ATGTTGTTGCTGATTCCTCAAACTGTGTAGAG  716



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56576014215


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5