BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940930
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14500.1 | Symbols: | aldose 1-epimerase family protein | c... 1535 0.0
> AT5G14500.1 | Symbols: | aldose 1-epimerase family protein |
chr5:4674233-4676765 REVERSE LENGTH=1329
Length=1329
Score = 1535 bits (831), Expect = 0.0
Identities = 911/949 (96%), Gaps = 7/949 (1%)
Strand=Plus/Plus
Query 1 TCGAGGTTAA--A-GCCAAAATCGATGCCTTTGAATGTAGCCAATGATCGTGATGGTTCT 57
|||||||||| | ||| |||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 115 TCGAGGTTAATTAGGCCCAAATCGATGCCTTTAAATGTAGTCAATGATCGTGATGGCTCT 174
Query 58 TCTCGCATTCTTTTGACCGACCCTGCCGGTTCAACTGCTGAGGTGCTTTTGTATGG-GGG 116
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 175 TCTCGCATTCTTTTGACCGACCCTGCCGGATCAACTGCTGAGGTGCTTTTGTATGGAGGG 234
Query 117 ACAAGTGGTTTCTTGGAGAAATGAAAGGAGAGAGCAGTTGCTTTATATGAGCAGCAAGGC 176
|||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 235 -CAAGTGGTTTCTTGGAAAAACGAAAGGAGAGAGAAGTTGCTTTATATGAGCACCAAGGC 293
Query 177 GCAATTGAAACCACCCAAGGCCATTAGGGGAGGGTTACCTATCTGCTTTCCACAGTTTGG 236
||||||||| ||||| ||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 294 GCAATTGAAGCCACCAAAGGCGATCAGGGGAGGGTTACCTATCAGCTTTCCACAGTTTGG 353
Query 237 AAATTTTGGTGCACTTGAGCGACATGGATTTGCTCGTAACAGATTCTGGTCATTTGATAA 296
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 354 AAATTTTGGTGCACTTGAGCGACATGGATTTGCCCGTAACAGATTCTGGTCACTTGATAA 413
Query 297 TGATCCTGCACCTCTGCCGCCGGCTAACCAGCAATCAACTGTTGATTTAGTATTGAAGTC 356
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGATCCTTCACCTCTGCCTCCGGCTAACCAGCAATCAACTGTTGATTTAGTATTGAAGTC 473
Query 357 TACTGAAGATGATTTGAAGATATGGCCTCATAGCTTTGAACTTCGTGTTCGCATATCTAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TACTGAAGATGATTTGAAGATATGGCCTCATAGCTTTGAACTTCGTGTTCGCATATCTAT 533
Query 417 CAGTCCTGGAAAACTTACTATCATCCCGCGTGTGAGGAACACTGAC-CTAAAGGCATTCT 475
|||||||||||||||||| || |||||||||||||||||||||||| | ||||||||| |
Sbjct 534 CAGTCCTGGAAAACTTACAATAATCCCGCGTGTGAGGAACACTGACAC-AAAGGCATTTT 592
Query 476 CCTTTATGTTTTCACTTCGTAACTACTTATATGTATCCGACATAAGTGAAGTTCGGGTTG 535
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 CCTTTATGTTTTCACTTCGTAACTACTTATATGTATCCGATATAAGTGAAGTTCGGGTTG 652
Query 536 AGGGTCTGGAGACACTTGATTATCTGGACAACTTGATGCGTAGAGAAAGATTCACAGAGC 595
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 653 AGGGTCTGGAGACGCTTGATTATCTGGACAACTTGATGCGTAGAGAAAGATTCACGGAGC 712
Query 596 AGGCAGATGCAATTACCTTTGACGGCGAGGTTGATAGAGTGTACTTGAACACGCCGACAA 655
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 713 AGGCAGATGCAATTACCTTTGACGGCGAGGTTGATAAAGTGTACTTGAACACGCCGACAA 772
Query 656 AGATTGCCATCATAGATCATGAGAGAAAAAGAACTATCGAGTTGCGAAAGGAAGGCATGC 715
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 773 AGATTGCCATCATAGATCATGAGAGGAAAAGAACTATCGAGTTGCGAAAGGAAGGCATGC 832
Query 716 CAAATGCAGTTGTGTGGAACCCTTGGGATAAGAAGGCCAAGAGTATTGCAGATATGGGAG 775
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 833 CAAATGCAGCTGTGTGGAACCCTTGGGACAAGAAGGCCAAGAGTATTGCAGATATGGGAG 892
Query 776 ATGAGGATTACACAACAATGCTGTGTGTAGATTCTGGTGCTATAGAAACCCCAATTGTGT 835
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 893 ATGAGGATTACACAACAATGCTGTGTGTAGATTCTGGTGCTATAGAAAGCCCAATTGTGT 952
Query 836 TGAAGCCACATGAAGAGTGGAGAGGGAGACAAGAACTCTCTATCGTCTCCTCAAGCTACT 895
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 953 TGAAGCCACATGAAGAGTGGAAAGGAAGACAAGAACTCTCTATCGTCTCCTCAAGCTACT 1012
Query 896 GCAGCGGTCAGCTCGATCCACGTAAGGTTCTTTATGGGGATTACTGATA 944
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GCAGCGGTCAGCTCGATCCACGTAAGGTTCTTTATGGGGATTACTGATA 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5