BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940949
Length=578
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14680.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 929 0.0
> AT5G14680.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr5:4730907-4733081 REVERSE LENGTH=1297
Length=1297
Score = 929 bits (503), Expect = 0.0
Identities = 550/573 (96%), Gaps = 2/573 (0%)
Strand=Plus/Plus
Query 8 gagagag-agTCG-GTGAAACTATAATGGAGAGCGAGCCGACTCGAGTGATGGTGGCGGT 65
||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 32 GAGAGAGTAGTCGAGTGAAACAATAATGGAGAGCGAGCCTACTCGAGTGATGGTGGCGGT 91
Query 66 GAATGAATCGACTCTCAAAGGCTATCCACACGCGTCGATTAGCAGCAAAAAGGCATTCGA 125
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 92 GAATGAATCGACTCTCAAAGGCTATCCACACGCGTCGATAAGTAGCAAAAAAGCATTCGA 151
Query 126 GTGGACACTGAAGAGGATCGTTCGGTCCAATACCTCTGGTTTCAAGCTTCTCTTGCTCCA 185
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 152 GTGGACACTGAAGAAGATCGTTCGGTCCAATACCTCTGGCTTCAAGCTTCTCTTGCTCCA 211
Query 186 CGTTCAAGTTCAAGACGAAGACGGTTTTGATGACATGGACAGTATATATGCTTCCCCTGA 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CGTTCAAGTTCAAGACGAAGACGGTTTTGATGACATGGACAGTATATATGCTTCCCCTGA 271
Query 246 TGATTTCAGGGGAATGAGGGAGCGTAACAAGGCTAAAGGACTTCACCTTCTTGAGTTTTT 305
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TGATTTCCGACAAATGAGGGAGCGTAACAAGGCTAAAGGACTTCACCTTCTTGAGTTTTT 331
Query 306 CGTTAACAAATGTCATGATATTGGGGTTGGGTGCGAGGCCTGGATCAGGAAAGGTGATCC 365
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 332 CGTTAAGAAATGTCATGATATTGGGGTTGGGTGCGAGGCTTGGATCAGGAAAGGTGATCC 391
Query 366 CACTGAAGTGATATGCCATGAGGTGAGGCGAGTCCGGCCAGATTTTCTGGTTGTGGGAAG 425
||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 392 CACAGAATTGATATGCCATGAAGTGAGGCGAGTCCGGCCAGATTTTCTGGTTGTGGGAAG 451
Query 426 TCGTGGTCTCGGCCCATTCCAAAAGGTATTTGTTGGAACTGTGAGTGAATTTTGTGTGAA 485
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 452 TCGTGGTCTCGGCCCATTCCAAAAGGTATTTGTTGGAACAGTGAGTGAATTTTGTGTGAA 511
Query 486 GCATGCAGAATGCCCAGTCATCACAATCAAACGCAGTGCTGAAGAATCTCCACAAGATCC 545
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 512 GCATGCAGAATGCCCAGTCATCACAATCAAACGCACTGCTGAAGAATCTCCACAAGATCC 571
Query 546 AGCTGATGACTAAATTCCTAAAGCAACACAAAA 578
|||||||||||||||| | |||||||| |||||
Sbjct 572 AGCTGATGACTAAATTTCAAAAGCAACGCAAAA 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27779483291
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5