BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940980
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14980.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1450 0.0
> AT5G14980.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:4849600-4850583 FORWARD LENGTH=984
Length=984
Score = 1450 bits (785), Expect = 0.0
Identities = 906/964 (94%), Gaps = 9/964 (1%)
Strand=Plus/Plus
Query 22 ATGGGACTCCATCCAGTCTCAGAGGCCAACGCCTCAAGCCCCTTCGGTTCTCTCTCTGCC 81
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 ATGGGACTCCATCCAGTCTCAGAGGCCAACGCCTCAAGCCCCTTTGGTTCCCTCTCTGCG 60
Query 82 GC-CACATTTTACTCCCGCCACTCCGTCGCCCATTCCTCCGCCTT-TGTCACCAACCCAA 139
|| | ||| |||||||||||||||||| |||| ||||||| ||| ||||||||||| |
Sbjct 61 GCTGA-ATTCTACTCCCGCCACTCCGTCACCCACTCCTCCG-CTTACGTCACCAACCCCA 118
Query 140 CCGGCCTCAAACTCTTTACCCAATGGTGGACTCCACTCAACCGTCCACCACTCGGCCTCA 199
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCGGTCTCAAACTCTTTACCCAATGGTGGACTCCACTCAACCGTCCACCACTCGGCCTCA 178
Query 200 TTGCTGTTGTTCACGGCTTCACCGGCGAATCCAGCTGGTTCCTTCAACTAACATCCGTCC 259
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 179 TTGCTGTTGTCCACGGCTTCACCGGCGAATCCAGCTGGTTCCTCCAACTAACATCAGTCC 238
Query 260 TCTTCGCCAAATCCGGATACCTAACTTGCGCCATCGACCACCAAGGCCACGGCTTCTCAG 319
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 TCTTCGCAAAATCCGGATACCTCACTTGCGCCATCGACCACCAAGGCCACGGCTTCTCAG 298
Query 320 ACGGTTTAACCGCTCACATCCCAAACATCAACCTAATTGTCGACGACTGCATCTCCTT-T 378
||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 299 ACGGTTTGACCGCTCACATCCCAAACATCAACCTCATTGTTGACGACTGCATTTCCTTCT 358
Query 379 TTCGACGACTTCCGTAAGCGTCACGCTTCCTTCTCATCTCTCCCTTCCTTCCTCTACTCC 438
|| |||||||||||||| ||||||||||||| || | |||||| |||||||||||||
Sbjct 359 TT-GACGACTTCCGTAAACGTCACGCTTCCTCCT--T-TCTCCCGGCCTTCCTCTACTCT 414
Query 439 GAATCCCTTGGTGGCGCAATCGCTCTCTACATTACCCTCCGCCAGAAACACCAGTGGAAC 498
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 415 GAATCCCTTGGTGGCGCAATCGCTCTGTACATTACTCTCCGCCAGAAACACCAATGGAAC 474
Query 499 GGTCTTATCCTCAGCGGCGCAATGTGCTCGATCAGCCACAAATTCAAACCTCCCTGGCCG 558
||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||
Sbjct 475 GGTCTTATCCTCAGCGGTGCAATGTGCTCCATCAGTCACAAATTTAAACCTCCATGGCCG 534
Query 559 TTACAACACCTCTTAACCCTAGCAGCTACTCTCATCCCCACCTGGCGCGTCGTCCCCACT 618
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 535 TTACAACACCTCTTAACCCTAGCTGCTACTCTCATCCCCACCTGGCGCGTCGTCCCAACT 594
Query 619 CGCGGCTCCATCGCCGGCGTCTCTTTCAAGGAACCATGGAAACGGAAACTAGCCTATGCT 678
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 595 CGCGGCTCCATCGCCGGCGTCTCTTTCAAGGAGCCATGGAAACGGAAACTCGCCTATGCT 654
Query 679 AACCCAAACAGAACCGTCGGTAAACCACGAGCAGCCACGGCCTACGAGCTCGTACGAGTC 738
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 655 AACCCAAACAGAACCGTCGGTAAACCACGAGCAGCCACGGCCTATGAGCTCGTACGAGTC 714
Query 739 TGCGAGGATCTTCAAAGTAGGTTTGAAGAAGTTGAAGTCCCCTTGATGATTGTGCACGGT 798
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 TGCGAGGATCTTCAAAACAGGTTTGAAGAAGTTGAAGTCCCGTTGATGATTGTGCACGGT 774
Query 799 GGAGACGACGTCGTCTGCGATCCGGCCTCCGTCGAGGAGCTTTACCGGAGATGCAGTAGC 858
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 775 AGAGACGACGTCGTCTGCGATCCAGCCTCCGTCGAAGAGCTTTACCGGAGATGCAGTAGC 834
Query 859 AGAGACAAGACAATAAAGATTTATCCAGGGATGTGGCATCAGCTAATAGGAGAGTCGGAG 918
||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 835 AGAGACAAGACGATAAAGATTTATCCAGGGATGTGGCATCAGCTGATTGGAGAGTCAGAG 894
Query 919 GAGAACGTCGACTTGGTGTTCGGTGATGTTTTGGATTGGATTATGAAACGATCTGAAATC 978
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 895 GAGAACGTCGACTTGGTGTTCGGTGATGTTTTGGATTGGATTAAGACACGATCTGAAATC 954
Query 979 TCCA 982
||||
Sbjct 955 TCCA 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5