BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940982
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2435 0.0
> AT5G15010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4857171-4858959 FORWARD LENGTH=1789
Length=1789
Score = 2435 bits (1318), Expect = 0.0
Identities = 1510/1599 (94%), Gaps = 27/1599 (2%)
Strand=Plus/Plus
Query 1 CTTCCTTTAGGTCTGTGTTCTATGTTCTCTACTTCCATAGCTGATTCAGAGCAAGTGGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 CTTCCTTTAGGTCTGTGTTCTATGTTCTCTACTTCCATAGCTGATTCAGAGCAAGTGGGA 274
Query 61 TTTACTCGGAGTAACATTGAGAAGGATGATGAAAGTGAGGAAGAGATTGACCTCGATCTT 120
||||||||||||||||||||||| | |||| | | | |||| |||| | ||||||
Sbjct 275 TTTACTCGGAGTAACATTGAGAA--A-GATG--A-T---G-AGAG--TGACATTGATCTT 322
Query 121 GGTTTTACTATAAGTGATGATG-GTGTTTCAGAGGATGTTGGGACGATTGT-GAAGCTGT 178
|||| || |||||||||||| | |||||||||||||||||| | |||| | |||||||
Sbjct 323 GGTTGTAGTATAAGTGATGA-GCTTGTTTCAGAGGATGTTGGAAAGATT-TCGAAGCTGG 380
Query 179 TGAAAGATTGTGGGAGTGACCGGAAGGAACTGAGAAACAAGCTTGAGGAATGTGATGTGA 238
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 381 TGAAAGATTGTGGGAGTGACCGGAAGGAACTGAGGAACAAGCTTGAGGAATGTGATGTGA 440
Query 239 AGCCATCAAATGAATTAGTGGTGGAGATTCTTTCTCAAGTTCGCAATGATTGGGAAACTG 298
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 441 AGCCATCAAATGAATTGGTGGTGGAGATTCTTTCTCGAGTTCGTAATGATTGGGAAACTG 500
Query 299 CTTTCACTTTCTTTGTTTGGGCAGGGAAGGAGCTAGGTTATGTTCGTTCGGTTCGTGAGT 358
||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct 501 CTTTCACTTTCTTTGTTTGGGCAGGGAAGCAGCAAGGTTATGTTCGTTCTGTTCGTGAGT 560
Query 359 ATCACTCTATGATCTCGATTCTTGGTAAAATGAGGAAGTTTGATACAGCTTGGACTTTGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ATCACTCTATGATCTCGATTCTTGGTAAAATGAGGAAGTTTGATACAGCTTGGACTTTGA 620
Query 419 TTGATGAGATGAGAAAGTTTAGCCCTTCTCTTGTGAACTCACAGACACTTTTGATCATGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TTGATGAGATGAGAAAGTTTAGCCCTTCTCTTGTGAACTCACAGACACTTTTGATCATGA 680
Query 479 TTAGGAAGTATTGTGCGGTTCATGATGTTGGGAAAGCGATAAACACGTTCCACGCCTACA 538
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 681 TTAGGAAGTATTGTGCGGTACATGATGTTGGGAAAGCCATAAACACGTTCCATGCCTACA 740
Query 539 AAAGATTCAAACTTGAAATGGGGATTGATGATTTTCAGAGTTTGCTCTCTGCTCTTTGTA 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 741 AAAGATTCAAACTTGAAATGGGGATTGATGATTTTCAGAGTTTGCTCTCGGCTCTTTGTA 800
Query 599 GGTATAAGAATGTTTCTGATGCTGAGCATTTGATCTTCTGTAATAAGGATACGTATCCGT 658
|||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 801 GGTATAAGAATGTTTCAGATGCTGGGCATTTGATCTTCTGTAACAAGGATAAGTATCCGT 860
Query 659 TTGACGCCAAAAGTTTTAACATAGTTCTCAATGGATGGTGTAACGTGATTGGTAGCCCAC 718
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 861 TTGACGCCAAAAGTTTCAACATTGTTCTCAATGGATGGTGTAACGTGATTGGTAGCCCAC 920
Query 719 GGGAGGCTGAACGAGTCTGGATGGAGATGGGAAATGTCGGAGTCAAACACGATGTCGTGT 778
||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 921 GGGAGGCTGAAAGGGTCTGGATGGAGATGGGAAATGTTGGAGTCAAACATGATGTTGTGT 980
Query 779 CTTATTCAAGCATGATATCTTGCTATTCGAAAGGTGGTAGCTTGAATAAGGTTCTCAAAC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CTTATTCAAGCATGATATCTTGCTATTCGAAAGGTGGTAGCTTGAATAAGGTTCTCAAAC 1040
Query 839 TTTTTGATCGGATGAAGAAAGAGTCTATAGAGCCAGATAGAAAAGCGTACAACGCGGTGA 898
|||||||| ||||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 1041 TTTTTGATAGGATGAAGAAAGAGTGTATAGAGCCTGATAGAAAAGTGTACAACGCGGTGG 1100
Query 899 TTCACGCTCTTGCCAAAGCTAGGTTTGTCTCCGAGGCGAGGAATTTGATGAAGACAATGG 958
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 1101 TTCACGCTCTTGCCAAAGCTAGCTTTGTCTCCGAGGCGAGAAATTTAATGAAGACAATGG 1160
Query 959 AGGAGGAGAAAGGGATGGAGCCAAATGTTGTTACTTACAACTCTCTCATCAAACCTCTAT 1018
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1161 AGGAGGAGAAAGGGATTGAGCCCAATGTTGTTACTTACAACTCTCTCATCAAACCTCTAT 1220
Query 1019 GCAAGGCTAGAAAAACCGAAGAGGCTAAACAGGTTTTCGATGAGATGCTGAAGAAAGGAC 1078
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1221 GCAAGGCTAGAAAAACCGAAGAGGCTAAACAGGTTTTCGATGAGATGCTGGAGAAAGGAC 1280
Query 1079 TCTTGCCAACAATCCGAACATACCATGCGTTTATGCGGATTCTAAGAACAGGAGAAGAGG 1138
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1281 TCTTCCCAACAATCCGTACATATCATGCGTTTATGCGGATTCTAAGAACAGGAGAGGAGG 1340
Query 1139 TGCTTGAGCTATTAGCTAAAATGAGAAAGATGGGTTGTCAACCAACTGTGGATACATACA 1198
| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||
Sbjct 1341 TTTTTGAGCTATTAGCTAAAATGAGAAAGATGGGCTGTGAACCAACTGTGGAGACATACA 1400
Query 1199 TAATGCTGATCCGTAAGTTATGTAGGTGGCGCGATTTTGATAATGTGTTATTGTTGTGGG 1258
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1401 TAATGCTGATCCGTAAGTTATGTAGGTGGCGCGATTTCGATAATGTGTTATTGTTGTGGG 1460
Query 1259 ATGAGATGAAGGAAAAGGGCGTTGGTCCGGACCTTAGTTCATACATTGTAATGATACATG 1318
||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1461 ATGAGATGAAGGAAAAGACCGTTGGTCCAGACCTTAGCTCATACATTGTGATGATACATG 1520
Query 1319 GTCTGTTCTTGAATGGTAAGATAGAAGAAGCGTATGGGTACTATAAAGAGATGAAGGAAA 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1521 GTCTGTTCTTGAATGGTAAGATAGAAGAAGCGTATGGGTACTATAAAGAGATGAAGGACA 1580
Query 1379 AGGGTATGAGACCAAATGAAAATGTTGAAGATATGATTCAAAGCTGGTTTTCAGGAAAAC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 AGGGTATGAGACCAAATGAAAATGTTGAAGATATGATTCAAAGCTGGTTTTCAGGAAAAC 1640
Query 1439 AGTATGCAGAGCAGCGGGTAATAGATTCGAAAGGGGAGGTTTCAGGAGTCGATAAAGGAG 1498
||||||||||||||||| ||| |||||||||||||||||| || | | | || ||||
Sbjct 1641 AGTATGCAGAGCAGCGGATAACAGATTCGAAAGGGGAGGT--CA--A-T--A-AA-GGAG 1691
Query 1499 GTATTGTGAAAAAATCTGAAAGAGAAAAGAACTTTCTCCAGCAGCCTGAGGTGAGAAAGG 1558
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 CTATTGTAAAAAAATCTGAAAGAGAAAAGAACTTTCTCCAGCAGCCTGAGGTGAGAAAGG 1751
Query 1559 TTGTCAGAG-GACATGGATATTCGTTTTGGGATGAATAG 1596
|||| |||| | |||||||||||||||||||||||||||
Sbjct 1752 TTGTTAGAGAG-CATGGATATTCGTTTTGGGATGAATAG 1789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79818866550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5