BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940990
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15080.1 | Symbols: | Protein kinase superfamily protein | ... 2335 0.0
AT3G01300.1 | Symbols: | Protein kinase superfamily protein | ... 1308 0.0
> AT5G15080.1 | Symbols: | Protein kinase superfamily protein
| chr5:4886114-4888788 FORWARD LENGTH=2015
Length=2015
Score = 2335 bits (1264), Expect = 0.0
Identities = 1460/1549 (94%), Gaps = 35/1549 (2%)
Strand=Plus/Plus
Query 1 TCTTTGTCTGTCTTTGGTGAGATGGGTTTGGATGCTGTTAAAGCTAAGGGGAATTGGAAA 60
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 280 TCTCTGTCTGTCTTTGGTGAGATGGGTTTGGATGCTGTTAAAGCTAAAGGGAATTGGAAA 339
Query 61 TCGGAGAAACCTAAAGAGACTGAGAATAAG-A--GCAAGAAGAATAGCAATGGTGATGAT 117
|||||||||||||||||||||||||||||| | ||||||| | || ||||||||||||
Sbjct 340 TCGGAGAAACCTAAAGAGACTGAGAATAAGAATCACAAGAAG-A-AG-AATGGTGATGAT 396
Query 118 AATAACAAAAGTAGAGATGACGAAGAAG-AGACAGAAGAAGCAAGTGGGTGTTGGGTTAA 176
||| ||||||||| |||| ||||||| ||| || |||||||||||| || ||||| ||
Sbjct 397 AAT---AAAAGTAGAAATGAAGAAGAAGAAGA-AGGAGAAGCAAGTGGTTGCTGGGTCAA 452
Query 177 ATTTAGGTTTATGATTGGTTGCATACCTTCAAAATCAGACCTTGATGCTTCTTCTTCTTC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 453 ATTTAGGTTTATGATTGGTTGCATACCTTCAAAATCAGACCTTGATGCTTCTTCTTC-T- 510
Query 237 TACTATCTATGGCTCTACCTGCACTGTTGCAACAATTGAAAGTAAATCGGCAAATGAGAA 296
| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||
Sbjct 511 T-CTATCTATGGCTCTAACTGCACTGTTACAACAATGGAAAGTAAATCGGCAAATGAGAA 569
Query 297 ATTAAACGATCAACCAGTTGGTGGTCCAGTTTCCTCCACAACAACAACTAGCAATGCAGA 356
|| ||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 570 ATCAAATGATCAACCAG-T--TGGTCAAGTTTCCTCCACAACAACAACTAGCAATGCAGA 626
Query 357 AAGCTCTTCATCTACTCCAATGATCAGTGAAGAACTTAAGATTTCTTCTCACCTCAGGAA 416
||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||
Sbjct 627 AAGCTCTTCATCTACTCCAGTCATCAGTGAAGAACTTAACATTTCTTCTCACCTCCGGAA 686
Query 417 GTTTACTTTCAATGATCTTAAGCTATCAACTAGAAATTTCAGACCGGAGAGTCTTCTTGG 476
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 687 GTTTACTTTCAATGATCTTAAGCTATCTACTAGAAATTTCAGACCCGAGAGTCTTCTTGG 746
Query 477 AGAAGGTGGTTTTGGTTGTGTCTTCAAAGGATGGATCGAAGAAAACGGAACTGCTCCTGT 536
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 747 AGAAGGTGGTTTTGGTTGTGTCTTTAAAGGATGGATCGAAGAAAACGGTACTGCTCCTGT 806
Query 537 TAAACCTGGTACTGGCCTTACAGTTGCAGTTAAAACCTTAAATCCTGATGGACTTCAAGG 596
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 807 TAAACCTGGTACTGGTCTTACGGTTGCAGTCAAAACCTTAAATCCTGATGGACTTCAAGG 866
Query 597 TCACAAAGAATGGCTTGCTGAGATTAATTTCCTTGGTAACCTTCTCCATCCAAATCTAGT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 TCACAAAGAATGGCTTGCTGAGATTAATTTCCTTGGTAACCTTCTCCATCCAAATCTAGT 926
Query 657 TAAGCTGGTTGGTTATTGCATCGAAGATGATCAAAGGTTGCTTGTGTATGAGTTTATGCC 716
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 927 TAAGCTTGTTGGTTATTGCATTGAAGATGATCAAAGGTTGCTTGTGTATGAGTTTATGCC 986
Query 717 TCGAGGAAGTTTAGAGAATCACCTTTTCAGAAGGTCGTTGCCTCTTCCTTGGTCTATCCG 776
| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 987 TAGAGGAAGTCTGGAGAATCACCTTTTCAGAAGGTCCTTGCCTCTTCCTTGGTCTATCCG 1046
Query 777 GATGAAGATTGCATTAGGTGCTGCAAAAGGTCTCAGTTTCCTCCATGAAGAAGCTTTGAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GATGAAGATTGCATTAGGTGCTGCAAAAGGTCTCAGTTTCCTCCATGAAGAAGCTTTGAA 1106
Query 837 GCCTGTTATATATCGAGATTTCAAAACATCAAACATTTTACTTGATGCAGACTACAATGC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GCCTGTTATATATCGAGATTTCAAAACATCAAACATTTTACTTGATGCAGACTACAATGC 1166
Query 897 AAAACTATCAGATTTTGGACTTGCCAAAGATGCTCCTGATGAAGGCAAAACCCATGTTTC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 AAAACTATCAGATTTTGGACTTGCCAAAGATGCTCCTGATGAAGGCAAAACCCATGTTTC 1226
Query 957 TACTCGGGTTATGGGAACATATGGCTATGCTGCTCCCGAATATGTAATGACCGGTCACTT 1016
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TACTAGGGTTATGGGTACATATGGCTATGCTGCTCCCGAATATGTAATGACCGGTCACTT 1286
Query 1017 GACATCAAAGAGCGATGTCTATAGTTTTGGGGTGGTTCTGCTGGAAATGCTGACTGGGCG 1076
|||||||||||||||||| |||||||||||||||||||| || |||||| ||||||| ||
Sbjct 1287 GACATCAAAGAGCGATGTTTATAGTTTTGGGGTGGTTCTACTTGAAATGTTGACTGGACG 1346
Query 1077 ACGATCTATGGACAAAAACCGCCCAAATGGTGAGCACAACTTAGTGGAATGGGCAAGACC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 ACGATCTATGGACAAAAACCGCCCAAATGGTGAGCACAACTTAGTGGAATGGGCAAGACC 1406
Query 1137 ACATCTCCTTGACAAAAGAAGGTTTTACCGGTTACTTGATCCGAGGCTTGAGGGCCATTT 1196
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCATCTTCTTGACAAGAGAAGGTTTTACCGGTTACTTGATCCGAGGCTTGAGGGCCATTT 1466
Query 1197 CTCAATCAAAGGTGCTCAAAAGGTGACTCAGCTTGCTGCACAGTGTCTTAGCCGTGACCC 1256
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1467 TTCAATCAAAGGTGCTCAAAAAGTGACTCAGCTTGCTGCACAATGTCTTAGCCGTGACCC 1526
Query 1257 CAAGATTAGGCCAAAGATGAGTGATGTTGTCGAAGCACTTAAACCACTTCCGCATCTCAA 1316
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1527 CAAGATTAGGCCAAAGATGAGTGATGTTGTGGAAGCACTTAAACCACTTCCGCATCTGAA 1586
Query 1317 AGACATGGCGAGCTCTTCTTACTACTTCCAGACAATGCAAGCGGAACGTTTGAAAAATGG 1376
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1587 AGACATGGCAAGCTCTTCTTACTACTTCCAGACAATGCAAGCTGAACGTTTGAAAAATGG 1646
Query 1377 GTCAGGTCGATCTCAGGGAGGAAGCGGATTTGGATCAAGAAACGGGCAACATCAACCCGT 1436
|||||||||||| || |||| ||||||||||||||||||||||| ||||||||
Sbjct 1647 GTCAGGTCGATCCCA---AGGA------TTTGGATCAAGAAACGGGCAACACCAACCCGT 1697
Query 1437 GTTTCGAACACTGTCTAGTCCTCATGGTCAACATGGTTCTTCGCCTTATCGACATCAGAT 1496
|||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1698 GTTTCGAACACTGTCTAGTCCTCATGGT-----T----CTTCGCCTTATCGACATCAGAT 1748
Query 1497 TCCTTCTCCAAAGCCTAAAGGAGCAACTACATAGCTCTTGCGTGGAGGA 1545
|||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1749 TCCTTCGCCAAAGCCTAAAGGAGCAACTACATAGCTCTTACGTGGTGGA 1797
> AT3G01300.1 | Symbols: | Protein kinase superfamily protein
| chr3:90598-93585 REVERSE LENGTH=1942
Length=1942
Score = 1308 bits (708), Expect = 0.0
Identities = 1271/1535 (83%), Gaps = 69/1535 (4%)
Strand=Plus/Plus
Query 13 TTT-GGTGAGATGGGTTTGGATGCTGTTAAAGCTAAGGGGAATTGGAAATCGGAGAAACC 71
||| || ||||||||||| ||| ||||||||| || || ||||||| |||| ||| | |
Sbjct 241 TTTGGGGGAGATGGGTTTCGATTCTGTTAAAGTTATGGAGAATTGGCAATCCAAGACATC 300
Query 72 TAAAGAGACTGAGAATAAGAGCAAGAAGAATAGCAATGG-TGATG-ATAATAACAA-AA- 127
||| |||| |||||| | || |||||| | ||| || || | | || ||||| ||
Sbjct 301 TAATGAGAATGAGAA-GA-AG-AAGAAG-A-AGC---GGAGGAGGAAGAAGAACAACAAT 352
Query 128 GT-AGAGATGA-CGAAGAAGA-GACAGAAGAAGCAAGTGGGTGTTGGGTTAAATTTAGGT 184
|| ||| | | ||| | | || ||||||||||| |||||||||||| ||||||||||
Sbjct 353 GTCAGA-AACAGTGAACATTATGA-AGAAGAAGCAAATGGGTGTTGGGTCAAATTTAGGT 410
Query 185 TTATGA-T-TGGTTGC-ATACCTTCAAAATCAGACCTTGATGCTTCTTCTTCTTCTACTA 241
||| | | | ||||| | |||||| ||||||| |||| | | | || ||| | |
Sbjct 411 ATAT-AGTCT-GTTGCGCT-TCTTCAACATCAGACGTTGA-G--AC--C-TC-TCT-C-A 458
Query 242 TCTATGGCTCTACCT-GCACTGTTGCAACAATTGAAAGTAAATCGGCAAATGAGAAATTA 300
|| | ||||| || |||||| || | |||| | || |||| || | ||| |
Sbjct 459 -CTCT--CTCTA-CTAGCACTG-TG--------GGAAGTCAGTCCGCAATTGTGCAATCA 505
Query 301 AACGATCAACCAGTTGGTGGTCCAGTTTCCTCCACAACAACAACTAGCAATGCAGAAAGC 360
|| || ||||| | | ||| ||||| || || || || |||||||||||||||||||||
Sbjct 506 AATGACCAACC-G--GTTGGCCCAGTCTCTTCTACTACTACAACTAGCAATGCAGAAAGC 562
Query 361 TCTTCATCTACTCCAATGATCAGTGAAGAACTTAAGATTTCTTCTCACCTCAGGAAGTTT 420
|||| || ||||| || || |||||||||||||| || | ||||||||| | |||||||
Sbjct 563 TCTTTGTCCACTCCTATCATAAGTGAAGAACTTAACATCTATTCTCACCTTAAGAAGTTT 622
Query 421 ACTTTCAATGATCTTAAGCTATCAACTAGAAATTTCAGACCGGAGAGTCTTCTTGGAGAA 480
|||||| |||||| ||| | | ||||||||||||||||| || || ||||| ||||||
Sbjct 623 TCTTTCATTGATCTCAAGTTGGCTACTAGAAATTTCAGACCTGAAAGCCTTCTCGGAGAA 682
Query 481 GGTGGTTTTGGTTGTGTCTTCAAAGGATGGATCGAAGAAAACGGAACTGCTCCTGTTAAA 540
||||| |||||||||||||||||||| ||| |||| || ||||||||||||||||||||
Sbjct 683 GGTGGCTTTGGTTGTGTCTTCAAAGGCTGGGTCGAGGAGAACGGAACTGCTCCTGTTAAG 742
Query 541 CCTGGTACTGGCCTTACAGTTGCAGTTAAAACCTTAAATCCTGATGGACTTCAAGGTCAC 600
||||| ||||||||||| ||||| || |||||||||||||||||||| ||||| |||||
Sbjct 743 CCTGGCACTGGCCTTACTGTTGCCGTCAAAACCTTAAATCCTGATGGCCTTCAGGGTCAT 802
Query 601 AAAGAATGGCTTGCTGAGATTAATT-TCCTTGGTAACCTTCTCCATCCAAATCTAGTTAA 659
||||| ||||||||||||||||||| | |||||||| ||||||||||| ||||| |||||
Sbjct 803 AAAGAGTGGCTTGCTGAGATTAATTAT-CTTGGTAATCTTCTCCATCCCAATCTTGTTAA 861
Query 660 GCTGGTTGGTTATTGCATCGAAGATGATCAAAGGTTGCTTGTGTATGAGTTTATGCCTCG 719
||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 862 ACTGGTGGGTTATTGTATCGAAGATGATCAAAGGCTGCTTGTATATGAGTTTATGCCTCG 921
Query 720 AGGAAGTTTAGAGAATCACCTTTTCAGAAGGTCGTTGCCTCTTCCTTGGTCTATCCGGAT 779
||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct 922 AGGAAGTTTGGAGAATCACCTTTTCAGAAGGTCCTTGCCTCTTCCATGGTCAATTCGGAT 981
Query 780 GAAGATTGCATTAGGTGCTGCAAAAGGTCTCAGTTTCCTCCATGAAGAAGCTTTGAAGCC 839
|||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||
Sbjct 982 GAAGATTGCATTAGGTGCTGCAAAGGGTCTCAGTTTCCTTCACGAAGAAGCTTTAAAGCC 1041
Query 840 TGTTATATATCGAGATTTCAAAACATCAAACATTTTACTTGATGCAGACTACAATGCAAA 899
|| || ||||||||||||||||| ||||| |||||||| |||| || |||||||| ||
Sbjct 1042 GGTCATTTATCGAGATTTCAAAACCTCAAATATTTTACTGGATGGGGAGTACAATGCTAA 1101
Query 900 ACTATCAGATTTTGGACTTGCCAAAGATGCTCCTGATGAAGGCAAAACCCATGTTTCTAC 959
| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1102 ATTATCAGATTTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTAC 1161
Query 960 TCGGGTTATGGGAACATATGGCTATGCTGCTCCCGAATATGTAATGACCGGTCACTTGAC 1019
||| || ||||| || ||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 1162 TCGAGTCATGGGCACTTATGGTTACGCTGCCCCCGAGTATGTAATGACCGGTCACTTGAC 1221
Query 1020 ATCAAAGAGCGATGTCTATAGTTTTGGGGTGGTTCTGCTGGAAATGCTGACTGGGCGACG 1079
|||||| ||||| || || ||||| || |||||||| || |||||||||||||| || |
Sbjct 1222 ATCAAAAAGCGACGTTTACAGTTTCGGTGTGGTTCTTCTCGAAATGCTGACTGGTAGAAG 1281
Query 1080 ATCTATGGACAAAAACCGCCCAAATGGTGAGCACAACTTAGTGGAATGGGCAAGACCACA 1139
||| ||||||||||| || ||||| ||||| |||||| | || |||||||| ||||| ||
Sbjct 1282 ATCAATGGACAAAAATCGACCAAACGGTGAACACAACCTCGTTGAATGGGCGAGACCGCA 1341
Query 1140 TCTCCTTGACAAAAGAAGGTTTTACCGGTTACTTGATCCGAGGCTTGAGGGCCATTTCTC 1199
|||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||
Sbjct 1342 TCTCCTGGACAAAAGAAGATTCTACCGGTTACTTGATCCGAGGCTGGAGGGTCATTTCTC 1401
Query 1200 AATCAAAGGTGCTCAAAAGGTGACTCAGCTTGCTGCACAGTGTCTTAGCCGTGACCCCAA 1259
| | ||||| || ||||| |||||||||||||| ||||| || |||||||||||| ||||
Sbjct 1402 AGTTAAAGGAGCACAAAAAGTGACTCAGCTTGCAGCACAATGCCTTAGCCGTGACTCCAA 1461
Query 1260 GATTAGGCC-AAAGATGAGTGATGTTGTCGAAGCACTTAAACCACTTCCGCATCTCAAAG 1318
|| || || ||| |||||||| || || |||| |||||| || || || || ||||| |
Sbjct 1462 AATAAGACCCAAA-ATGAGTGAAGTGGTGGAAGTACTTAAGCCTCTCCCACACCTCAAGG 1520
Query 1319 ACATGGCGAGCTCTTCTTACTACTTCCAGACAATGCAAGCGGAACGTTTGAAAAATGGGT 1378
||||||| ||| |||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 1521 ACATGGCTAGCGCTTCTTACTACTTCCAGACAATGCAAGCTGAACGTTTGAAAGCTGGTT 1580
Query 1379 CAGGT-C-GATCTCAGGGAGGAAGCGGATTTGGATCAAGAAACGGGCAACATCAACCCGT 1436
| ||| | | | || || | | | ||| || |||||||||||||||| || ||
Sbjct 1581 CTGGTTCTGGT-TCTGGTCGT--G-G-ATTCGGGTCAAGAAACGGGCAAC--CA----GT 1629
Query 1437 GTTTCGAACACTGTCTAGTCCTCATGGTCAA-CATGGTTCTTCGCCTTATCGACATCAGA 1495
|||||| ||| |||||||||||||||||||| | |||||| ||||||||||| |||||||
Sbjct 1630 GTTTCGGACATTGTCTAGTCCTCATGGTCAAGC-TGGTTCGTCGCCTTATCGTCATCAGA 1688
Query 1496 TTCCTTCTCCAAAGCCTAAAGGAGCAACTACATAG 1530
|||| ||||| ||||||||||| |||||||| |||
Sbjct 1689 TTCCGTCTCCTAAGCCTAAAGGTGCAACTACTTAG 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76505630580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5