BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940996
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15130.1 | Symbols: WRKY72, ATWRKY72 | WRKY DNA-binding prot... 2621 0.0
> AT5G15130.1 | Symbols: WRKY72, ATWRKY72 | WRKY DNA-binding protein
72 | chr5:4904347-4907094 FORWARD LENGTH=1941
Length=1941
Score = 2621 bits (1419), Expect = 0.0
Identities = 1616/1708 (95%), Gaps = 26/1708 (2%)
Strand=Plus/Plus
Query 1 ATCTTCTGATATTTATAACTATGGAGGTTCTTTTGAAATTACCCACTTCAGAGTCTCCTC 60
|||||||||||||| | || |||||||||||||||||||||||| |||||||||||||||
Sbjct 60 ATCTTCTGATATTTCTGACAATGGAGGTTCTTTTGAAATTACCCTCTTCAGAGTCTCCTC 119
Query 61 TTAAGGATAAGGTTTTTGGATCTGTTCAAGTCCATGAAGCTAGTAAGGATGATGGAGATC 120
|||||||||| ||||||||||||||| |||||||||||| ||||| |||||| ||||
Sbjct 120 TTAAGGATAA---ATTTGGATCTGTTCAAATCCATGAAGCTAATAAGGGTGATGGTGATC 176
Query 121 ACCAAGAACTTGAATCTGCCAAGGCAGAGATGAGCGAGGTGAAGGAAGAGAACGAGAAGC 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATCAAGAACTTGAATCTGCCAAGGCAGAGATGAGCGAGGTGAAGGAAGAGAACGAGAAGC 236
Query 181 TTAAAGGGATGCTGGAACGAATTGAAAGTGATTACAAATCTCTCAAGCTCAGATTCTTCG 240
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTAAAGGAATGCTCGAACGAATTGAAAGTGATTACAAATCTCTCAAGCTCAGATTCTTCG 296
Query 241 ACATAATTCAACAAGAACCTTCAAACACCGCAACTAAAGATCAAAACATGGTTGATCATC 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 297 ACATAATTCAACAAGAACCTTCAAACACCGCAACTAAAAATCAAAACATGGTTGATCATC 356
Query 301 CCAAGCCAACGACGACGGATTTGAGTTCTATTGACCAAGAACGCGAGCTTGTATCCCTTT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 357 CCAAGCCAACGACGACGGATTTGAGTTCTTTTGACCAAGAACGCGAGCTTGTATCGCTTT 416
Query 361 CACTAGGGAGAAGAAGTTCTTCCCCAAGTGAAT-GC-ACCCCCAAAAGAGAAGAGAAAAC 418
|||||||||||||||||||||||||||||| || || |||| ||||| |||||||||||
Sbjct 417 CACTAGGGAGAAGAAGTTCTTCCCCAAGTG-ATAGCGTCCCCAAAAAG-GAAGAGAAAAC 474
Query 419 GGACGCAATCAGCGCAGAAGTCAACGCTGACGAAGAGTTGACCAAGGCTGGCTTGACCTT 478
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 475 GGACGCAATCAGCGCAGAAGTCAACGCTGACGAAGAGTTGACTAAGGCCGGCTTGACCTT 534
Query 479 AGGGATCAATAATGGCAACGGCCGTGAAACGGACGAGGGTTTATCTATGGAGAATCGTGC 538
||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||
Sbjct 535 AGGGATCAATAATGGCAACGGAGGTGAACCGAAAGAGGGTTTATCTATGGAGAATCGTG- 593
Query 539 CAATTCTAGCCATGGCTCGGAAGAAGCTCCTGGAGAAACTTGGCCACCAGGTAAAGTTAC 598
||| | | | |||||||||||||||| ||| | | | ||||||||||||||
Sbjct 594 CAAAT-T---C-TGGCTCGGAAGAAGCT--TGG-G---C---G---CCAGGTAAAGTTAC 636
Query 599 GGGGAAGAGAAGCTCTCCAGCACCAGCCTCCGGTGGCGATGCTGATGGTGAGGCCGGTCA 658
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 637 GGGGAAGAGAAGCTCTCCAGCACCAGCCTCCGGTGGCGATGCTGACGGTGAGGCCGGTCA 696
Query 659 ACAAAACCATGTTAAGAGAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACGCCAACGAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 697 ACAAAACCATGTTAAGAGAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACACCAACGAT 756
Query 719 GAATGATGGTTGCCAATGGAGAAAATATGGACAAAAGATTGCGAAAGGAAATCCATGTCC 778
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GAATGATGGTTGTCAATGGAGAAAATATGGACAAAAGATTGCGAAAGGAAATCCATGTCC 816
Query 779 ACGGGCATATTATCGCTGCACGGTTGCACCTGGATGTCCCGTTAGAAAACAGGTCCAAAG 838
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 ACGAGCATATTATCGCTGCACGGTTGCACCTGGATGTCCCGTTAGAAAACAGGTCCAAAG 876
Query 839 ATGTGCAGATGACATGTCTATACTAATCACAACCTATGAAGGAACACACAGCCATTCTCT 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 877 ATGTGCAGATGACATGTCTATACTAATCACAACCTATGAAGGAACACACAGCCACTCTCT 936
Query 899 TCCACTCTCAGCCACCACCATGGCCTCCACCACCTCAGCCGCTGCCTCCATGCTCCTCTC 958
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 937 TCCACTCTCAGCCACCACCATGGCTTCCACCACATCAGCCGCTGCCTCCATGCTCCTCTC 996
Query 959 GGGCTCTTCCTCCTCATCAGCCGCCGAAATGATCGGAAATAACCTCTACGACAATTCAAG 1018
||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 997 TGGCTCCTCCTCCTCACCAGCCGCTGAAATGATCGGAAATAACCTCTACGACAATTCAAG 1056
Query 1019 ATTCAACAACAACAACAAATCCTTCTACTCACCCACGCTTCACTCCCCATTACATCCCAC 1078
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1057 ATTCAACAACAACAACAAATCCTTCTATTCACCCACCCTTCACTCCCCATTACATCCCAC 1116
Query 1079 CGTCACTCTAGACCTCACCGCTCCACAACACTCTTCATCGTCTTCTTCTTCATTGCCTTC 1138
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1117 CGTCACTCTAGACCTCACTGCTCCACAACACTCTTCCTCGTCTTCTTCTTCATTGCTTTC 1176
Query 1139 TTTAAATTTCAACAAATTCTCAAACTCTTTCCAAAGATTCCCATCCACAAGCCTAAATTT 1198
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1177 TTTAAATTTCAACAAATTCTCGAACTCTTTCCAAAGATTCCCATCTACAAGCCTAAATTT 1236
Query 1199 CTCTTCTACTTCATCAACATCATCAAACTCGTCTACTCTCAACCTACCCGCGATTTGGGG 1258
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1237 CTCTTCTACTTCATCAACATCATCAAACCCGTCTACTCTCAACCTACCCGCGATTTGGGG 1296
Query 1259 TAATGGGTATTCTTCTTATACTCCATATCCTTACAACAACGTCCAATTTGGGACGTCCAA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TAATGGGTATTCTTCTTATACTCCATATCCTTACAACAACGTCCAATTTGGGACGTCCAA 1356
Query 1319 CCTAGGAAAAACAGTCCAAAATAGCCAGTCCTTAACCGAAACCCTAACAAAAGCGCTTAC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CCTAGGAAAAACAGTCCAAAATAGCCAGTCCTTAACCGAAACCCTAACAAAAGCGCTTAC 1416
Query 1379 TTCCGACCCAAGTTTTCACTCGGTGATCGCTGCTGCGATCTCAACTATGGTCGGATCCAA 1438
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1417 TTCCGACCCAAGTTTCCACTCGGTGATCGCTGCTGCCATCTCAACTATGGTCGGATCAAA 1476
Query 1439 CGGGGAACAACAGATCGTCGGTCCACGGCATTCGATTAGCAATAACATTCAGCAAACCAC 1498
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1477 TGGAGAACAACAGATTGTCGGTCCACGGCATTCGATTAGCAATAACATTCAACAAACCAA 1536
Query 1499 CGCGACAAATAATAACAAAGGTTGTGGAGGCTATTTTAGCAGCTTATTGATGTCTAACAT 1558
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1537 CACGACGAATAATAACAAAGGATGTGGAGGCTATTTTAGCAGCTTATTGATGTCTAACAT 1596
Query 1559 AATGGCGAGTAATCAAACGGGTGCGGCTATGGATCAACCATCGTCGCAACTTCCTCACTT 1618
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 1597 TATGGCGAGTAATCAAACGGGTGCTTCTTTGGATCAACCATCGTCGCAACTTCCTCCCTT 1656
Query 1619 CTCTATGTTCAAGAATTCTTCTTCTTCGTCATCCACGACTAATTTCGTGAACAACGAAGA 1678
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1657 CTCTATGTTCAAGAATTCTTCTTCTTCGTCTTCTACGACTAATTTCGTGAACAAGGAAGA 1716
Query 1679 GAAAAGCTAGTAAATTCTTCTTGTCTTT 1706
||||||||||| | || ||||||| |||
Sbjct 1717 GAAAAGCTAGTCA-TTGTTCTTGTTTTT 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5