BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940999

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15160.1 | Symbols: BNQ2, BHLH134 | BANQUO 2 | chr5:4921266-...   545    7e-155


> AT5G15160.1 | Symbols: BNQ2, BHLH134 | BANQUO 2 | chr5:4921266-4922648 
REVERSE LENGTH=601
Length=601

 Score =  545 bits (295),  Expect = 7e-155
 Identities = 320/331 (97%), Gaps = 5/331 (2%)
 Strand=Plus/Plus

Query  1    AGAATA-TTTTTCAAGTCAAA-ATGTCGTCTAGCAGAAGGTCGAGACAAGCAAGCTCATC  58
            |||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  74   AGAATATTTTTTCAAATCAAACATGTCTTCTAGCAGAAGGTCGAGACAAGCAAGCTCATC  133

Query  59   ATCAAGAATTAGCGATGACCAGATCACTGATCTCATCTCAAAGCTCCGACAGTCCATTCC  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134  ATCAAGAATTAGCGATGACCAGATCACTGATCTCATCTCAAAGCTCCGACAGTCCATTCC  193

Query  119  GGAGATTCGCCAGAACCGTCGTTCCAACACGGTATCAGCGTCGAAAGTGTTACAAGAGAC  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  194  GGAGATTCGCCAGAACCGTCGTTCCAACACGGTATCAGCGTCGAAAGTGTTACAAGAGAC  253

Query  179  TTGCAACTACATAAGAAACTTGAACAAGGAAGCCGATGACCTCAGTGATCGATTGACTCA  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  254  TTGCAACTACATAAGAAACTTGAACAAGGAAGCCGATGACCTCAGTGATCGATTGACTCA  313

Query  239  GCTTCTGGAATCCATTGATCCTAATAGCCCACAAGCCGCCGTTATTAGGAGCTTGATTAA  298
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  314  GCTTCTGGAATCCATTGATCCTAATAGCCCACAAGCCGCAGTTATTAGGAGCTTGATTAA  373

Query  299  TGGATAAT-AT--TATAAGTTTATTAGTTGT  326
            |||||||| |   ||||| || |||||||||
Sbjct  374  TGGATAATTAAGATATAAATTGATTAGTTGT  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15180860198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5