BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941002
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01190.1 | Symbols: | Peroxidase superfamily protein | chr3... 446 2e-124
> AT3G01190.1 | Symbols: | Peroxidase superfamily protein | chr3:67058-68536
REVERSE LENGTH=1203
Length=1203
Score = 446 bits (241), Expect = 2e-124
Identities = 696/907 (77%), Gaps = 66/907 (7%)
Strand=Plus/Plus
Query 92 TGCTCTAA-CCAATGCACAAGGACTGAAAGTTGGGTTCTACAACAAGGCATGCCCGA-AA 149
||||| || ||||| | ||||| ||||||| || ||||||| ||| ||||||| | ||
Sbjct 113 TGCTC-AAGCCAATTCGCAAGGTTTGAAAGTAGGTTTCTACAGCAAAACATGCCC-ACAA 170
Query 150 GC-CGAGCTTGTTGTTAAGAA-GTCTATCTTCGACATG-G-TGAA-GAAGGATCCATCAC 204
| |||| | | ||||| || ||| | |||| ||| | |||| ||| | ||| |||
Sbjct 171 -CTCGAGGGTATAGTTAAAAAGGTC-GTGTTCG--ATGCGATGAACAAAGCA-CCAACAC 225
Query 205 TTGGACCTCCTTTGCTTAGACTGTTCTTCCACGATTGCTTCGTTCGGGGATGTGAAGGGT 264
|||| |||||||||||||| ||||||||||||| |||||||||||||||||||| || |
Sbjct 226 TTGGTGCTCCTTTGCTTAGAATGTTCTTCCACGACTGCTTCGTTCGGGGATGTGACGGAT 285
Query 265 CGGTCTTGCTAGAGTTAAA--GAACAAAAAAGCTGAGAAGAACGC-GCCTCCTAACCTCA 321
| || ||| |||| |||| ||||| ||| |||||||| || | ||||||||| |
Sbjct 286 CAGTTTTGTTAGA--TAAACCAAACAATCAAGGTGAGAAGAGTGCAG-TTCCTAACCTAA 342
Query 322 G-CCTCGAAGGGTTTGATTTCATAGACAATAT-CAAGGCAGCTCTAGAAAAGGAATGTCC 379
| | ||| |||||||| |||||||| || | |||||| ||||||||||| | |||||
Sbjct 343 GTCTTCG-AGGGTTTGGCATCATAGACGAT-TCCAAGGCGGCTCTAGAAAAAGTGTGTCC 400
Query 380 AGGCATTGTTTCTTGCTCAGATGTCTTGGCCCTTGTTGCTAGAGACGTAGTGGTTGCGC- 438
|| |||||||||||||| ||| ||||||| ||||| |||||||||| | ||||||| |
Sbjct 401 GGGAATTGTTTCTTGCTCTGATATCTTGGCACTTGTCGCTAGAGACGCAATGGTTGCACT 460
Query 439 TCAATGGACCGTCATGGGAAGTTGAAACGGGAAGAAGAGACGGTCGGGTTACAAACATCA 498
| || ||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 461 TGAA-GGACCATCATGGGAAGTTGAAACGGGAAGAAGAGACGGTAGGGTTTCTAACATCA 519
Query 499 ATGAGGCCACATCAAACATGCCATCGCCATTTTC-TAATATAACTACTCTTATCACCCAA 557
| || | |||| | ||||||| || |||| ||| || || | ||||||| | |
Sbjct 520 ACGAAG-----TCAA-CTTGCCATCACC-TTTTGATAACATCACCAAGCTTATCAGCGAT 572
Query 558 TTCCAATCCAAAGG-CCTCAACAAGAAAGACCTCGTCGTGCTTTCAGGTGCACACACGGT 616
|| | || ||||| ||||||| |||| || || ||| | || || |||| ||||| |
Sbjct 573 TTTCGCTC-AAAGGGCCTCAACGAGAAGGATCTAGTCATTCTCTCGGGTGGTCACACAAT 631
Query 617 TGGGGACGC-ACATTGTCCTATAGTCAGAAACAGGCTCTACAATTTCACCGGAAAAGGAG 675
||| | | |||||||||| || | | |||| |||| ||||| ||||||||||||||||
Sbjct 632 TGGA-ATGGGACATTGTCCTTTATTGACAAACCGGCTTTACAACTTCACCGGAAAAGGAG 690
Query 676 ACAGTGATCCAAGCTTAGACAAGGAATATGCAGCCA-GACTCAG-AAGAAAATGTAAGCC 733
|||| || ||||| || ||| ||| || || || | | ||||| |||||| || |||||
Sbjct 691 ACAGCGACCCAAGTTTGGACTCGGAGTACGCCGCTAAG-CTCAGGAAGAAA-TGCAAGCC 748
Query 734 GACCGATACCACGACAGATCTGGAAATGGATCCAGGAAGCTTCACAACATTTGA-TAAAA 792
|||||||| ||||| | ||| || |||||||| || || |||| ||||||||| | |
Sbjct 749 CACCGATACGACGACGGCTCTAGAGATGGATCCGGGGAGTTTCAAAACATTTGACTTGA- 807
Query 793 GCTACTTCAAGCTTGTGTCTAA-ACAAAGAGGGTTGTTTCAA-TCTGATGCAGCTCTTTT 850
||||||||| ||| ||| |||| | || |||| | |||| | || ||||| ||||| |
Sbjct 808 GCTACTTCACGCTAGTGGCTAAGAGAA-GAGGACT-TTTCCAGTCGGATGCTGCTCTACT 865
Query 851 AAACAA-TC-AAGAAACTAAATCTTACGTTCTCATGCAA-ACGA-AACGT--T-ATGGTT 903
|||| || |||| ||| |||| || || ||||| | || || | | |||| |
Sbjct 866 CGACAACTCCAAGA--CTAGGGCTTATGT-CT--TGCAACA-GATAA-GAACTCATGGGT 918
Query 904 CTACT-TTCTTTAAGGACTTTGGTGTCTCCATGGTGAAGTTGGGTCGGATTGGAGTT-TT 961
| | | |||||||| |||||||||||||| |||||||| ||||||||| ||||||| ||
Sbjct 919 CAA-TGTTCTTTAACGACTTTGGTGTCTCTATGGTGAAAATGGGTCGGACTGGAGTTCTT 977
Query 962 AACGGGT 968
| |||||
Sbjct 978 A-CGGGT 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5