BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941018

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15320.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   339    8e-93


> AT5G15320.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant 
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G01130.1); 
Has 64 Blast hits to 64 proteins in 11 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:4977538-4978894 
FORWARD LENGTH=507
Length=507

 Score =  339 bits (183),  Expect = 8e-93
 Identities = 196/202 (97%), Gaps = 1/202 (0%)
 Strand=Plus/Plus

Query  1    GACCAACAGGTGATTTGACAATGACGCTACCTCCAGGACTTTACTCCGGCACCAGCTCTC  60
            |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  91   GACCAACA-GTGATTTGACAATGACGCTACCTCCAGGTCTTTACTCCGGCACCAGCTCTC  149

Query  61   TTGCTCTGGTGGCTCGTGCTTCGGCTTTTGGCTTGGGTCTCGTCTACGGGAACATGAAGC  120
            ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  150  TTGCTCTGGTGGCTCGTGCTTCGGCTTTTGGGTTGGGTCTCGTCTATGGGAACATGAAGC  209

Query  121  TCAAGGTCCTTAAGATCAAATCGATGTCACAGAAGACGGTTGAAGCCACCGCTCATCATT  180
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  210  TCAAGGTCCTTAAGATCAAATCGATGTCACAGAAGAAGGTTGAAGCCACCGCTCATCATT  269

Query  181  AAACCACTCTTCTCTCTTTACA  202
            ||||||||||||| ||||||||
Sbjct  270  AAACCACTCTTCTTTCTTTACA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9003941829


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5