BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941020
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15340.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2931 0.0
> AT5G15340.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:4982273-4984144 REVERSE LENGTH=1872
Length=1872
Score = 2931 bits (1587), Expect = 0.0
Identities = 1779/1874 (95%), Gaps = 4/1874 (0%)
Strand=Plus/Plus
Query 21 ATGAAATGCTTATCCTACCAAAATGTTCGTCTCCTTCTCCGACAGAGCGCTCACCGTTCG 80
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAAATGCTTATCCTACCAAAAAGTTCGTCTCCTTCTCCGACATTGCGCTCACCGTTCG 60
Query 81 TTTCTCCATCCCGGCAGGGAATTGCACGCTGTTTTAACCACTTCTGGATTGAAGAAAGCT 140
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTTCTCCGTCCCGGCAAGGAATTGCACGCCGTTTTAACCACTTCTGGATTGAAGAAAGCT 120
Query 141 CCGAGGTCGTACCTCAGCAACGCGCTCTTTCAGTTTTATGCATCCTCTGGTGAAATAGCT 200
|| |||||||| || ||||| ||||| |||||||||||||| |||||||||||||| | |
Sbjct 121 CCCAGGTCGTATCTTAGCAATGCGCTATTTCAGTTTTATGCTTCCTCTGGTGAAATGGTT 180
Query 201 ACTGCCCAGAAACTGTTCGACGAAATTCCTCTGTCAGATAAAGACAATGTGGACTGGACA 260
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 181 ACTGCCCAGAAACTGTTCGACGAAATTCCTCTTTCAGAAAAAGACAATGTGGATTGGACC 240
Query 261 ACTTTGTTATCCTCTTTTTCCCGGTTTGGATTGTTGGTTAATTCGATGAAGCTCTTCGTG 320
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 241 ACTTTGTTATCCTCTTTTTCTCGGTATGGATTGTTGGTTAATTCGATGAAGCTCTTCGTG 300
Query 321 GAAATGAGAAGGAAAAGAGTAGAGATTGATGATGTTTCTTTAGTCTGCTTGTTTGGCGTG 380
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 301 GAAATGAGAAGGAAAAGAGTAGAGATTGATGATGTTTCTGTAGTTTGTTTGTTTGGCGTG 360
Query 381 TGTGCCAAGCTCGAAGATCTGAGG-TTCGGTGAACAAGGGCATGGGGTTGCTGTAAAGAT 439
||||||||||| || ||| || || |||| | ||||||| ||||||||||||||||||||
Sbjct 361 TGTGCCAAGCTGGAGGATTTG-GGTTTCGCTCAACAAGGACATGGGGTTGCTGTAAAGAT 419
Query 440 GGGATTTTTGACTAGTGTAAAGGTTTGTAATGCCTTAATGGATATGTATGGGAAATGTGG 499
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GGGGGTTTTGACTAGTGTAAAGGTTTGTAATGCCTTGATGGATATGTATGGGAAATGTGG 479
Query 500 GTTTGTGAGTGAAGTCAAACGCATTTTCCAGGCGTTAGAGGAGAAGAGCGTTGTTTCATG 559
| ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||
Sbjct 480 GCTTGTGAGTGAAGTCAAACGTATTTTCGAGGAGTTAGAGGAGAAGAGCGTTGTTTCATG 539
Query 560 GACGGTGGTTTTGGACACTCTTGTGAAATGGGAGGGGTTGA-AGAGAGGAAGAGAGGTTT 618
|||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 540 GACGGTGGTTTTGGACACGGTTGTGAAATGGGAGGGGTT-AGAGAGAGGAAGAGAGGTTT 598
Query 619 TTGACGAAATGCCTGAGAGAAATGTTGTTGCTTGGACGCTTATGGTTGCTGGGTATTTGG 678
|| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 599 TTCACGAAATGCCTGAGAGAAATGCTGTTGCTTGGACGGTTATGGTTGCTGGGTATTTGG 658
Query 679 GAGCTGGGTTTACAAGGGAAGTATTGGAGCTTCTGGCAGAGATGGTGTTTAGATGTGGGC 738
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 GAGCTGGGTTTACAAGGGAAGTATTGGAGCTTCTGGCAGAAATGGTGTTTAGATGTGGGC 718
Query 739 ATGGTTTGAACTTTGTCACCCTTTGCTCGATGCTATCGGCTTGTGCACAATCGGGAAACC 798
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 719 ATGGTTTGAACTTTGTCACTCTTTGCTCGATGCTATCGGCTTGTGCTCAATCGGGAAATC 778
Query 799 TGGTAATTGGTAGATGGGTTCATGTGTATGCACTGAAAAAGGCAATGATGATGGGGGAGG 858
||||| |||| ||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct 779 TGGTAGTTGGAAGATGGGTTCATGTGTATGCATTGAAGAAGGAAATGATGATGGGGGAGG 838
Query 859 AAGAAACTTATGATGGTGTTATGGTGGGAACGGCATTGGTTGATATGTATGCTAAATGTG 918
||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 839 AAGCAAGTTATGATGATGTGATGGTGGGAACGGCATTGGTTGATATGTATGCTAAATGCG 898
Query 919 GAAACATAGATTCTTCCATTAAAGTCTTCAGATTGATGCTTAAGAGAAATGTGGTGACAT 978
||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||
Sbjct 899 GAAACATAGATTCTTCCATGAACGTCTTCAGATTGATGCGTAAGAGGAATGTGGTGACAT 958
Query 979 GGAATGCTTTGTTCAGCGGGTTAGCAATGCACGGGAAAGGTAGAATGGTGATTGACATGT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGAATGCTTTGTTCAGCGGGTTAGCAATGCACGGGAAAGGTAGAATGGTGATTGACATGT 1018
Query 1039 TCCCAGAGATGGTAAGAGAGGTGAAGCCGGATGACTTAACCTTCACTGCTGTCTTAAGTG 1098
||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1019 TCCCACAGATGATAAGAGAGGTGAAGCCAGATGACTTAACCTTCACTGCTGTCTTAAGTG 1078
Query 1099 CTTGCAGCCACTTGGGGATGGTAGATGAAGGGTGGCGATGTTTCCACAGCCTCCAGTTCT 1158
|||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1079 CTTGCAGCCACTCGGGGATAGTAGATGAAGGGTGGCGATGTTTCCACAGCCTCCGGTTCT 1138
Query 1159 ATGGTTTGGAACCTAAGGTTGACCATTATGCATGTATGGTAGATATATTGGGGCGAGCTG 1218
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 1139 ATGGTTTGGAACCTAAGGTTGACCATTATGCATGTATGGTAGATCTTTTGGGCCGAGCTG 1198
Query 1219 GTCGTATTGAAGAAGCAGAGATATTGATGAGGGAAATGCCAGTGCCTCCGAATGAAGTTG 1278
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTCTTATTGAAGAAGCAGAGATCTTGATGAGGGAAATGCCAGTGCCTCCGAATGAAGTTG 1258
Query 1279 TCCTTGGTTCGCTTCTAGGCTCGTGTAGTGTCCATGGAAAGCTGGAGATAGCCGAACGAA 1338
|||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1259 TCCTCGGTTCGCTTCTAGGCTCGTGCAGTGTCCATGGAAAGGTGGAGATAGCCGAACGAA 1318
Query 1339 TTAAAAGAGAGCTTATTCAGATGAGTCCAGGCAACACAGAGTACCAAATACTTATGTCAA 1398
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1319 TTAAAAGAGAGCTTATTCAGATGAGTCCAGGCAACACAGAGTATCAAATACTTATGTCCA 1378
Query 1399 ACATGTATGTTGCAGAAGGAAGGAGTGACATTGCTGATGGGTTAAGGGGAAGTCTGAGAA 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACATGTATGTTGCAGAAGGAAGGAGTGACATTGCTGATGGGTTAAGGGGAAGTCTGAGAA 1438
Query 1459 ACCGAGGCATCAGAAAAATACCTGGTTTGAGTTCCATTTACGTTAATGACTCAGTACATC 1518
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1439 AGCGAGGCATCAGAAAAATACCTGGTTTGAGTTCCATTTATGTTAATGACTCAGTACATC 1498
Query 1519 GGTTTAGTTCAGGAGATCGATCCCACCCGAGAACGAAAGAGGTCTACTTGAAGTTGAATG 1578
||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||||||
Sbjct 1499 GGTTTAGTTCAGGAGATAGATCACATCCGAGAACGAAAGAGATCTACTTGAAGTTGAATG 1558
Query 1579 AAGTGATTGAACGGATAAGATCAGCTGGTTATGTCCCTGATATCTCTGGCCTGGTTTCTC 1638
|||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
Sbjct 1559 AAGTGATTGAACGGATAAGATCAGCTGGCTACGTCCCTGATGTCTCTGGCCTGGTTTCAC 1618
Query 1639 CTTCGGAGGGTGACTTGGAGGAAAAAGAGCAAGCTTTGTGCTGTCACAGTGAGAAACTGG 1698
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1619 ATTCGGAGGGTGACTTGGAGGAAAAAGAGCAAGCTTTGTGCTGTCACAGCGAGAAATTGG 1678
Query 1699 CTGTCTGTTTCGGGCTTCTGGAAACAAAACCGAGGACACCTCTTCTTGTCTTCAAGAATC 1758
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1679 CTGTCTGTTTCGGGCTTCTGGAAACAAAACCGAGTACACCTCTTCTTGTCTTCAAGAATC 1738
Query 1759 TGAGGATATGTCGGGATTGTCATTCGGCTATGAAGATTGTTTCAAAGGTCTATGACCGAG 1818
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TGAGGATATGTCGAGATTGTCATTCGGCTATGAAGATTGTTTCAAAGGTCTATGACCGAG 1798
Query 1819 AAATCATCATCAGAGACAGAAATAGATTTCATCAGTTCAAGGGAGGCTCTTGTTCTTGTT 1878
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1799 AAATCATCATCAGAGACAGAAATAGATTTCATCAGTTCAAGGGAGGTTCTTGTTCTTGTT 1858
Query 1879 CCGATTATTGGTGA 1892
||||||||||||||
Sbjct 1859 CCGATTATTGGTGA 1872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94678227870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5