BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941021

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15350.1 | Symbols: ENODL17, AtENODL17 | early nodulin-like ...   854    0.0  


> AT5G15350.1 | Symbols: ENODL17, AtENODL17 | early nodulin-like 
protein 17 | chr5:4984959-4986239 REVERSE LENGTH=829
Length=829

 Score =  854 bits (462),  Expect = 0.0
 Identities = 546/586 (93%), Gaps = 8/586 (1%)
 Strand=Plus/Plus

Query  1    gagagagagagagagag---ag--agagagagaAAAATGTCGAGATTGACGGTGTTGATT  55
            |||||||||||||||||   ||  ||||||| ||||||| ||||||| |||||| |||||
Sbjct  50   GAGAGAGAGAGAGAGAGTTTAGTTAGAGAGAAAAAAATGGCGAGATTCACGGTGCTGATT  109

Query  56   GTGGCGGTTGTGCTAGCTTTTCTAGTTGCGGCGCCGATGCC-GGAAGTGGCGGCGAAGAA  114
              |||||||||||||||||||||| | |||||||||||||| || |||| |||| |||||
Sbjct  110  ACGGCGGTTGTGCTAGCTTTTCTAATGGCGGCGCCGATGCCAGG-AGTGACGGCCAAGAA  168

Query  115  GTATACAGTCGGCGAGAACAAGTTTTGGAACCCCAACATTAACTACACCATCTGGGCTCA  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  169  GTATACAGTCGGCGAGAACAAGTTTTGGAACCCCAACATTAACTACACCATCTGGGCTCA  228

Query  175  GGGCAAGCATTTCTACCTTGGAGACTGGCTCTATTTCGTGTTCGACAGAAACCAACACAA  234
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  229  GGGCAAGCATTTCTACCTCGGAGACTGGCTCTATTTCGTGTTCGACAGAAACCAGCACAA  288

Query  235  CATTCTTGAAGTGAACAAGACTGACTATGAAGGCTGTATCGCCGACCACCCAATACGTAA  294
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  289  TATTCTTGAAGTGAACAAGACTGACTATGAAGGATGTATCGCCGACCACCCAATACGCAA  348

Query  295  CTGGACACGTGGAGCTGGGAGAGACATTGTCACTCTCAACGAGACCAAACATTACTACCT  354
            |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct  349  CTGGACACGTGGAGCTGGGAGAGACATTGTCACTCTCAACCAGACCAAGCATTACTACCT  408

Query  355  TCTTGATGGAAAGGGTGGCTGCTATGGCGGTATGAAGCTAGCTGTTAAGGTAGAGAAGCT  414
            ||| || ||||||||||| || || || || ||||||||| ||||||| |||||||||||
Sbjct  409  TCTCGACGGAAAGGGTGGATGTTACGGTGGCATGAAGCTATCTGTTAAAGTAGAGAAGCT  468

Query  415  TCCTCCTCCACCAAAATCTGCACCTGTCAAGAACATTGGATCAGTTTCAATGGTCACAGG  474
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  469  TCCTCCTCCACCAAAATCTGCACCTGTCAAGAACATTGGATCGGTTTCAATGGTCACAGG  528

Query  475  TCTCGCTCAATTCATGGTTCCGGTATCTCTTTTCGCTTTCCCGGCAATGTGGGATGTGAT  534
            |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  529  TCTCGCTCAATTCATGATTCCGGTATCTCTATTCGCTTTCCCTGCAATGTGGGATGTGAT  588

Query  535  CTCAAGGATGTGGTAGTGGTGACCAGTCT-CAAAGTTCTTTAGTTG  579
            ||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct  589  CTCAAGGATGTGGTAGTAGTCACCAGTCTTCAAAGTTCTTTAGTTG  634



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5