BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941028
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15440.1 | Symbols: EDL1 | EID1-like 1 | chr5:5012061-501428... 1485 0.0
> AT5G15440.1 | Symbols: EDL1 | EID1-like 1 | chr5:5012061-5014281
FORWARD LENGTH=1407
Length=1407
Score = 1485 bits (804), Expect = 0.0
Identities = 872/906 (96%), Gaps = 0/906 (0%)
Strand=Plus/Plus
Query 2 TGATTGAAACGCAGAGAGAATGATTTTACCAAAGCAGTATCGTTGCACACACTCGCCGAG 61
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 357 TGATTGAAACACAGAGAGAATGATTTTACCAAAGCAGTATTGTTGCACACACTCGCCGAG 416
Query 62 CTGCCAATGCACAAAAGGCCATTTAAACGAAGACGTGTTGTTATTAGTGTTCCAACATTT 121
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTGCCAATGCACCAAAGGCCATTTAAACGAAGACGTGTTGTTATTAGTGTTCCAACATTT 476
Query 122 GAATTGGAATCCGAAATTAGTTGCAACATTTTCCTGTGTATGCAGATGGTTTGATGATTT 181
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 477 GAATTGGAATCCGAAATTAGTTGCAACACTTTCCTGTGTATGCAGATGGTTTGATGATTT 536
Query 182 CGCCAAACGGGTACTATGGAAAGAGTTTTGCAAGACGCGTGCCCCAAAAATGATGCTTGA 241
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 CGCCAAACGGGTACTATGGAAAGAGTTTTGCAAGACTCGTGCCCCAAAAATGATGCTTGA 596
Query 242 TTTGCAATCTAGCGGTAGTCACTGCATTGACGGTAACTGGCGAGCCCTTGGGAAGCTGCT 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 TTTGCAGTCTAGCGGTAGTCACTGCATTGACGGTAACTGGCGAGCCCTTGGGAAGCTTCT 656
Query 302 CATCTACTGCTCAGGATGTACACAAGGTGGTCTTTTCAATAGCTCTGTTCAAATCCCAGG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CATCTACTGCTCAGGATGTACACAAGGTGGTCTTTTCAATAGCTCTGTTCAAATCCCAGG 716
Query 362 CCACTTTGTTTATAGAACCCGGTTCTCAAGAACATTAGGAAAAAGCCTCCTTCCACCTCA 421
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 717 CCACTTTGTTTATAGAACCCGGTTCTCAAGAACATTAGGAAGAAGCCTCCTTCCGCCTCA 776
Query 422 GTGTAGAACCGATGTACTCTATGTTTGTGATCCATGTGAGCATCTTGACCAAGGGGAAGA 481
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 777 GTGTAGAACTGATGTACTCTATGTTTGTGATCCATGCGAGCATCTTGACCAAGGAGAAGA 836
Query 482 AGGGGACGTGGGTTTGTTCCGTGGGATTTTCAAGTCATTCCCAACATCTAAAGTCCGGAA 541
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 837 AGGCGACGTGGGTTTGTTCCGTGGGATTTTCAAGTCATTCCCAACATCGAAAGTTCGGAA 896
Query 542 AGTGATCATTAACAAGGCAGTTCCTTTTCATCCGTCCGAGGTTTGCCCGTATTGTAAAGC 601
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 AGTGATCATTAACAAGGCGGTTCCTTTTCATCCATCCGAGGTTTGCCCGTATTGTAAAGC 956
Query 602 TAGGCTATGGAGCATGCTACAAGCTAAGATAATACCTCAGAGTGCCTGCATTCGTTTGGA 661
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TAAGCTATGGAGCATGCTACAAGCTAAGATAATACCTCAGAGTGCCTGCATTCGTTTGGA 1016
Query 662 AGCTTATGAAGACTGCATTGAGTATTTTGTTTGCCTTAATGGACATTTGCTCGGTATCTG 721
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1017 AGCTTATGAAGACTGCATTGAGTATTTTGTTTGCCTTAATGGACATTTGCTGGGTATCTG 1076
Query 722 CACTCTTGCGCCTTTGTCTGATTCGGAGGATGCTATTCCAAGCGAAGATAGCAATCACAT 781
|||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct 1077 CACTCTCGCGCCTTTGTCTGATTCAGAGGATGCAATTCCAAGCGAAGATAACAATCACAC 1136
Query 782 AGAGAAGAAACAAGACAATTGCCTTCCGAAAGAGAACGTATTGAAAAGGAGAAATTCTTT 841
||||||||||||||||||| || |||| | ||||||||||||||||||||||||||||||
Sbjct 1137 AGAGAAGAAACAAGACAATGGCTTTCCTAGAGAGAACGTATTGAAAAGGAGAAATTCTTT 1196
Query 842 GTTGGGTGTAAGTGAAAATGGACCTCCGCCTCAAAAACGATTGACCAATCCAAATCAATG 901
|||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct 1197 GTTGGGTGGAAGTGAAAATGGACCTCCGCCGCAAAAACGACTGACCAATCCTAATCAGTG 1256
Query 902 TAACAT 907
|||||
Sbjct 1257 AAACAT 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5