BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941033
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15480.1 | Symbols: | C2H2-type zinc finger family protein ... 1336 0.0
> AT5G15480.1 | Symbols: | C2H2-type zinc finger family protein
| chr5:5025952-5027160 REVERSE LENGTH=1209
Length=1209
Score = 1336 bits (723), Expect = 0.0
Identities = 1079/1245 (87%), Gaps = 47/1245 (4%)
Strand=Plus/Plus
Query 21 ATGGAAGAAGAACATCAAGATCTCCATAAACCCATCT-ATGGAGCTCTGCGAAACCTCAA 79
|||||||| |||||||||||||||||||||||||| | |||||||| ||||| |||||||
Sbjct 1 ATGGAAGACGAACATCAAGATCTCCATAAACCCAT-TAATGGAGCTTTGCGAGACCTCAA 59
Query 80 GATTACTCATTCAC-GTAAAGAAACAGAAGAA-TCTATGAACCTACAGCGAGATTTTACT 137
|||||||| |||| | |||||||||||| || |||| ||||| ||||| |||| |||||
Sbjct 60 GATTACTCGGTCACAG-AAAGAAACAGAA-AAGTCTACGAACCAACAGCAAGATGTTACT 117
Query 138 TGTTACTACGGTCTAAGGGAAAACCCGAAGAAGAAAATCCAGGAGTCTCCGGAACCAATG 197
|||||||| ||||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 118 TGTTACTATGGTCTAAGGGAAAACTCGAAGAAGAAAACCCAGGAATCTCCGGAACCAATG 177
Query 198 AAGAAGATCTTGTTTCGATGCGAAGAATGTGGAAAAGGGTTTCGGTACGAGAAATGTTTT 257
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 178 AAGAAGATTTTGTTTCGATGCGAAGAATGTGGAAAAGGGTTTCGGTACGAGAAATATTTT 237
Query 258 TCGAATCATAAG-GCGGTGATGCATTTATCGACGAACCAGAAGGTTTGTGAAGAATCCGT 316
||||||| | || |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 238 AAGAATCAT-CGCTCGATGATGCATTTATCGCCGAACGAGAAGGTTTGTGAAGAATCCTT 296
Query 317 GATGAGTCTATGTCGTAGCCTAAGTTTTGTGAGGAAGAAGAAAAGATCGAGACTTGTTAG 376
||||| ||| | ||||||||| | ||||||| ||||||||||||||| ||||||| |||
Sbjct 297 GATGACTCTGTCTCGTAGCCTTGGGTTTGTGAAGAAGAAGAAAAGATCAAGACTTGGTAG 356
Query 377 GTACAAGAAGACTTCATTTTCTTGTTCGTTTACTACGTTTCATGAACCGCGTTCTGTTGT 436
|| | | || | | | || ||||||||||||| ||||||| ||||| || |
Sbjct 357 GT-C-TG-GGA----A--GAC-T-TT-ATTTACTACGTTTCTTGAACCGAGTTCTATTTT 404
Query 437 TGCTGCGAATGATGAAGAATTAGAAGTGGCGGATTGTTTGATTCTATTGTCCGAGAGTAC 496
|| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 405 TGATGCGACTGATGAAGAATTAGAAGTGGCGGATTGTTTGATTCTATTGTCTAAGAGTGC 464
Query 497 TCCCAAGTTTGTAGACGGACT-AAAACTTCTTGCTGAGGCAGTACATATTACTCATGAAA 555
||||||| ||||||||| | | |||| | ||| |||||||||||| | |||||| |||||
Sbjct 465 TCCCAAGGTTGTAGACGAATTGAAAAGT-CTTTCTGAGGCAGTACGTGTTACTCCTGAAA 523
Query 556 CACCTAAAAGTAGCTATGATTTGGGTTGTTTGCGT-AACAAGAAACCGCGAAATAG-TAG 613
||||| ||||||||||||||||||||||||||| | |||||||||||| |||| || | |
Sbjct 524 CACCTGAAAGTAGCTATGATTTGGGTTGTTTGC-TCAACAAGAAACCGAGAAA-AGGTGG 581
Query 614 TGAATTTGAATATGGGTTTTTCAGTAATGAGCAAAGATTTATGGAAGAAGGGTTTAGTAG 673
|||||| |||| |||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 582 TGAATTGGAATCTGGGGTTTTAAGTAATGAGCAAAGACTTATGGAAGAAGGGTTTAGTAG 641
Query 674 TTTTGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGATGATAACAGATTGGATCAACA 733
|| |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 642 TTATGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGACGAAAACAGATTGGATCAGCA 701
Query 734 GAAACGGAGAAAAGCTGGTGAATTTGAATCTG-AGTTTTTGAGTAATGAGCAAAGAATGC 792
|||||||||||||| ||||||||||||||| | | |||| |||||||||||||||| |||
Sbjct 702 GAAACGGAGAAAAGATGGTGAATTTGAATCCGGACTTTT-GAGTAATGAGCAAAGACTGC 760
Query 793 TAAAAGAAGAGATTACTACTCCTGTTACATTCAAAGGTCCAGCAAGTTTCTTGGGACGCA 852
|| |||||||||||||||||||||| ||||||||||||||||| |||| |||| ||| ||
Sbjct 761 TAGAAGAAGAGATTACTACTCCTGTGACATTCAAAGGTCCAGCGAGTTCCTTGAGACACA 820
Query 853 AGTGTGTTTTGGATCAGCACAAGCTGCGAAATGGAGGTGGATTTGGTTCTGAGTTTCTGA 912
|||||| |||||||| | | || || || || || ||||||| |||||||| |||
Sbjct 821 AGTGTGCTTTGGATC-G-A-AA--TG-GA---GG---TGAATTTGGTCCTGAGTTTTTGA 868
Query 913 GTAATGAGCAAAAACTGACGGGTGGGGCATGGAAAGAACCAGAGAGTTTCTTGGTAACA- 971
|||||||||||| ||||| || | ||||||||||||||| ||||||||| | || |
Sbjct 869 GTAATGAGCAAACACTGATGGAAGAAACATGGAAAGAACCAGTGAGTTTCTTAG-AAGAT 927
Query 972 AAG-ATTGAATTGGAACAGCGGAAACTGCGAAAAGCTGGTGACTTTGAAACTGGGTACTA 1030
||| || ||||| || ||||||||| ||||| ||||||| ||||||||| || ||| ||
Sbjct 928 AAGCAT-GAATTTGATCAGCGGAAAATGCGAGAAGCTGGCGACTTTGAATCTAGGTTTTA 986
Query 1031 CAGAACTGAGCTTGGAGTAGGAGCTATGGAGTGTTCTGATTCAGATTCTGAGATGATCAC 1090
||||| |||||||||||||||||||||||||||| || ||||||| |||| ||| ||||
Sbjct 987 CAGAATTGAGCTTGGAGTAGGAGCTATGGAGTGTACTTCTTCAGATACTGATATGCTCAC 1046
Query 1091 TG-AATCTGATAAGAAGAACGTTGAGCATCAATGCAGGTTGTGCAACAAGATATTCTCTT 1149
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1047 -GCAATCTGATAAGAAGAACGTTGAGCATCGATGCAGGTTGTGCAACAAGATATTCTCGT 1105
Query 1150 CATATCAAGCTCTAGGAGGTCATCAGACGATTCATCGGATGAGCAAATGTAAGTTCAAGA 1209
| |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1106 CTTATCAAGCTCTAGGGGGTCATCAGACGTTTCATCGGATGAGCAAATGTAAGAACAAGA 1165
Query 1210 AGAATTGCAGAGAGGAATCAGTAGAACCTGAGGATGAATCTATGA 1254
||||| ||| |||||||||||| ||||| ||||||| ||| |||
Sbjct 1166 AGAATGGCATAGAGGAATCAGTTGAACCC-AGGATGACTCTGTGA 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5