BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941037
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15510.2 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 963 0.0
AT3G01015.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 558 4e-158
> AT5G15510.2 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr5:5034005-5036795 FORWARD LENGTH=1882
Length=1882
Score = 963 bits (521), Expect = 0.0
Identities = 559/578 (97%), Gaps = 0/578 (0%)
Strand=Plus/Plus
Query 612 GCTAAGAATCTGGGGTTAGACCCCAATGCTTCGATTTCTTCGTCCTGGGACAGCACCCGC 671
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCTAAGAATCTGGGTTTAGACCCCAATGCTTCGATTTCTTCGTCCTGGGACAGCACCCGT 955
Query 672 GGCAGTGTTTTGAGTGGAAGTTCAAATGCTGGCAGGAGAAGCAGAAGAAATAGCATGGAC 731
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 956 GGCAGTGTTTTGAGTGGAAGTTCAAATGCTGGCAGGAGAAGTAGAAGAAATAGCATGGAG 1015
Query 732 TCATCGACTACAATGGGAAGTAGAAGATCAAAGAAGAAGCAGGTTAAGGTCACTTCATTG 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TCATCGACTACAATGGGAAGTAGAAGATCAAAGAAGAAGCAGGTTAAGGTCACTTCATTG 1075
Query 792 AAGCCGTTTAAGCTTAGAACTGAGCAAAGAGGTAAAATGAAAGAGGAAGAGTTTGCAAAA 851
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1076 AAGCCGTTTAAGCTTAGAACTGAGCAAAGAGGTAAAGTGAAAGAGGAAGAGTTAGCAAAA 1135
Query 852 AAGATTCATGAAATAACGTTGGAGGAAGAAAAGATGAGAATCCCCATTGCTCAAGGTCTT 911
||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAGATACACGAAATAACAATGGAGGAAGAAAAGATGAGAATCCCCATTGCTCAAGGTCTT 1195
Query 912 CCGTGGACAACCGATGAACCTGAGTGTCTAGTTAAGCCTCATTGGAAAGATATAACTAGA 971
|| ||||||||||||||||||||||| ||||| ||||||||||||||||| || || |||
Sbjct 1196 CCATGGACAACCGATGAACCTGAGTGCCTAGTGAAGCCTCATTGGAAAGACATTACAAGA 1255
Query 972 CCAGTCGACTTGACGCTTCACTCAGATGTCCGGGCAGTTGAACGCGCAGAATTTGATTAC 1031
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CCAGTCGACTTGACGCTCCACTCAGATGTCCGGGCAGTTGAACGCGCAGAATTTGATTAC 1315
Query 1032 CAGGTTGCCGAGAAGATGAGCTTCATTGAGCAATACAAAATGGAAAGAGAAAGACAACAG 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CAGGTTGCCGAGAAGATGAGCTTCATTGAGCAATACAAAATGGAAAGAGAAAGACAACAG 1375
Query 1092 AAGTTGGCAGAGGAAGAAGAGATAAAAAGGCTGAGGAAAGAATTGGTCCCCAAAGCACAA 1151
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1376 AAGTTGGCAGAGGAAGAAGAGATAAGAAGGCTGAGGAAAGAATTGGTCCCAAAAGCACAA 1435
Query 1152 CCAATGCCATACTTTGATCGACCATTCATTCCAAGAAG 1189
||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CCAATGCCATACTTTGATCGACCATTCATTCCAAGAAG 1473
Score = 771 bits (417), Expect = 0.0
Identities = 548/610 (90%), Gaps = 13/610 (2%)
Strand=Plus/Plus
Query 12 TTATCTTCGATGGAGTCGTTGACTTTGAAGAATGGGAAACCAGTGACTCCGGTGAAGGAT 71
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 107 TTATCTTCGATGGAGTCGTTGACATTGAAGAATGGGAAAGCAGGGACTCCGGTGAAGGAT 166
Query 72 CGGAGCAAGTTTCAGTCCAAGGTTCAAGAGAATTCCAGATCGTCGGAGAATGCAAACCCT 131
|||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||
Sbjct 167 CGGAGCAAGTTTCAGTCCAA---TCAAAAGATTTCCAGATCATCGGAGAATGCAAACCCT 223
Query 132 AACATTTCACACGCGAGTCCGGCTAAATCTCCGCTCACGAAATCTGCGAAGAAATCGGCG 191
||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||| |||
Sbjct 224 AACATTTCACAAGCGAGTCCTTCTAAATCACCGCTCATGAAATCTGCGAAGAAATCAGCG 283
Query 192 CAGAAGAATCAGAGTCCAAACCCTAAAAAACCTAGTCAGGCGGTTTCCTCTCCCCGGAAT 251
|||||||||| |||||| | |||| ||||||| |||||||||| |||||||||||||
Sbjct 284 CAGAAGAATCCGAGTCCGAGCCCT---AAACCTACCCAGGCGGTTTTCTCTCCCCGGAAT 340
Query 252 CGGATCAGAGAGAGGAAGTTTGTTGTGGTGGCGAAGAAGAATTCGAGGAAAGGGAAGAAG 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CGGATCAGAGAGAGGAAGTTTGTTGTGGTGGCGAAGAAGAATTCGAGGAAAGGGAAGAAG 400
Query 312 GATCCAGCGGTTACAGAATCGAAAGTTGCTGAGATAGATTGTAAATGCGGGGAGAGGAAG 371
|| |||||| |||||||||| || | ||||||||||||||||||||||| |||||||||
Sbjct 401 GAGCCAGCGATTACAGAATCCAAGGCAGCTGAGATAGATTGTAAATGCGGAGAGAGGAAG 460
Query 372 AAGGGGAACATGAAGTGTGTTTGTGTTGCATATGAAACTCTGCGTGCTTCGCAAGAGGAG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 AAGGGGAACATGAAGTGTGTTTGTGTTGCATATGAAACTCTGCGTGCTTCGCAAGAGGAG 520
Query 432 TTCTTCAAAAATCGAATTCAATCAGAGGAGGAAAAGGGAAA-TTTGGAGGAATGTTGTAA 490
|||||||||||||||||| ||||||||||||| |||| || |||||||||||| |||||
Sbjct 521 TTCTTCAAAAATCGAATTGAATCAGAGGAGGATAAGG-AAGCTTTGGAGGAATGCTGTAA 579
Query 491 TCTCGGACAAAAT-GTTGGA---GATGGAGGAGGATCCGGGGAACCGGAGAACATAGGCG 546
||||||| || | || | || ||| || ||| || ||||||||||| | |||||
Sbjct 580 TCTCGGA-AATGGCGATGAACTAGAAGGAAAAGAATCTGGAGAACCGGAGAAAACAGGCG 638
Query 547 CTTCTACAATGAAGAGGTCAAGGGCTAAGGTGGTTGAAGAAGCACGGCAAAGTGTGGCTG 606
||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct 639 TTTCCACAATGAAGAGATCAAGAGCTAAGGTGGTGGAAGAAGCACGGCAAAGTGTGCCTG 698
Query 607 TATCTGCTAA 616
|||||| |||
Sbjct 699 TATCTGGTAA 708
Score = 267 bits (144), Expect = 3e-70
Identities = 154/159 (97%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 1187 AAGGTCGAGCAAACATCCAACTGCACCACAAGATCCCAAGTTCCACATACCGCAACACAA 1246
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1563 AAGGTCGAGCAAACATCCAACTGCACCACGAGATCCCAAGTTTCACATACCGCAACACAA 1622
Query 1247 GAAGATCAGATGCTGCAGTTCATCTTCTTGGAGTGAAGCTGGCTCCTGCATGAGCGATTT 1306
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1623 GAAGATCAGATGCTGCAGTTCATCTTCTTGGAGTGAAACTGGCTCCTGCATGAGCGATTT 1682
Query 1307 CCAATATCAGTTTCTCTAAAAAGCTTCTTTTGGGTTTAC 1345
|||||||||||||||||| |||||||||||||| |||||
Sbjct 1683 CCAATATCAGTTTCTCTAGAAAGCTTCTTTTGGATTTAC 1721
> AT3G01015.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr3:1653-4159 REVERSE LENGTH=1754
Length=1754
Score = 558 bits (302), Expect = 4e-158
Identities = 516/619 (83%), Gaps = 16/619 (3%)
Strand=Plus/Plus
Query 693 TCAAATGCTGGCAGGAGAAGCAGAAGAAATAGCATGGACTCATC-GACTACAATGGGAAG 751
||||||| |||| |||| |||||||||||||| | || || || | || ||||||||||
Sbjct 974 TCAAATGGTGGCCGGAGGGGCAGAAGAAATAGCTTCGAATCCTCTG-CTTCAATGGGAAG 1032
Query 752 TAGAAGATCAAAGAAGAAGCAGGTTAAGGTCACTTCAT-TGAAGCCGTTTAAGCTTAGAA 810
||||||||||| |||||||||| | || |||||||| | ||||||| ||||| || ||||
Sbjct 1033 TAGAAGATCAACGAAGAAGCAGATCAAAGTCACTTC-TCTGAAGCCATTTAAACTCAGAA 1091
Query 811 CTGAGCAAAGAGGTA-AAATGAAAGAGGAAGAGTTTGCAAAAAAGATTCATGAAATAACG 869
||||| || | || | ||||||||| |||||||||||||| ||| | || || || |||
Sbjct 1092 CTGAGGAACG-GGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGACG 1150
Query 870 TTGGAGGAAG-AAAAGATGAGAATCCCCATTGCTCAAGGTCTTCCGTGGACAACCGATGA 928
|||||| ||| |||| | |||||||||||| |||||||||||||| |||||||| |||||
Sbjct 1151 TTGGAGAAAGCAAAA-AAGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGA 1209
Query 929 ACCTGAGTGTCTAGTTAAGCCTCATTG-GAAAGATATAACTAGACCAGTCGACTTGACGC 987
||||||| ||| ||||||||||| || ||||||||| || | |||||| ||||| | ||
Sbjct 1210 ACCTGAGAATCTGGTTAAGCCTCA-TGTGAAAGATATCACGATACCAGTAGACTTAAAGC 1268
Query 988 TTCACTCAGATGTCCGGGCAGTTGAACGCGCAGAATTTGATTACCAGGTTGCCGAGAAGA 1047
| || || || | || ||||| ||||| ||||||||||||||||||||| | ||||| |
Sbjct 1269 TCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAGGTTACTGAGAAAA 1328
Query 1048 TGAGCTTCA-TTGAGCAATACAAAATGGAAAGAGAAAGACAACAGAAGTTGGCAGAGGAA 1106
| | | | | | ||||||||||||| ||||||||| | ||||| ||| | ||||| |||
Sbjct 1329 TAAACCT-AGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAGCTAGCAGAAGAA 1387
Query 1107 GAAGAGATAAAAAGGCTGAGGAAAGAATTGGTCCCCAAAGCACAACCAATGCCATACTTT 1166
||||||||| ||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1388 GAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAGGCACAACCAATGCCATACTTT 1447
Query 1167 GATCGACCATTCATTCC-AAGAAGGTCGAGCAAACATCCAACTGCACCACAAGATCCCAA 1225
||||||||||||||||| || |||||||| ||| || || || | ||| | |||||||||
Sbjct 1448 GATCGACCATTCATTCCCAA-AAGGTCGAACAAGCACCCGACGGTACCTCGAGATCCCAA 1506
Query 1226 GTTCCACATACCGCAACACAAGAAGATCAGATGCTGCAGTTCATCTTCTTGGAGTGA-AG 1284
||| | |||||||||||||||||||| |||||||||||| |||| ||||||||||| |
Sbjct 1507 GTTTAATATACCGCAACACAAGAAGATAAGATGCTGCAGTACATCGTCTTGGAGTGACA- 1565
Query 1285 CTGGCTCCTGCATGAGCGA 1303
|||| || | |||||||||
Sbjct 1566 CTGGATCTTACATGAGCGA 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5