BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941038 Length=475 Score E Sequences producing significant alignments: (Bits) Value AT5G15520.1 | Symbols: | Ribosomal protein S19e family protein... 778 0.0 > AT5G15520.1 | Symbols: | Ribosomal protein S19e family protein | chr5:5037021-5038172 REVERSE LENGTH=689 Length=689 Score = 778 bits (421), Expect = 0.0 Identities = 445/457 (97%), Gaps = 0/457 (0%) Strand=Plus/Plus Query 19 GTGCAATGGCGACTGGTAAAACCGTGAAAGATGTTTCTCCTCACGATTTCGTGAAGGCTT 78 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32 GTGAAATGGCGACTGGTAAAACCGTGAAAGATGTTTCTCCTCACGATTTCGTGAAGGCTT 91 Query 79 ACGCTTCTCACCTCAAGCGATCTGGAAAGATCGAGCTTCCTCTATGGACAGACATTGTGA 138 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 92 ACGCTTCTCACCTCAAGCGATCTGGAAAGATTGAGCTTCCTCTATGGACAGACATTGTGA 151 Query 139 AGACTGGTCGTTTGAAGGAGCTTGCTCCATACGACCCTGATTGGTACTATATTAGAGCTG 198 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 152 AGACTGGTCGTTTGAAGGAGCTTGCTCCATATGACCCTGATTGGTACTACATTAGAGCTG 211 Query 199 CTTCTATGGCCAGAAAGATTTACCTGAGAGGAGGTCTTGGTGTTGGTGCTTTCAGAAGAA 258 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 212 CTTCTATGGCCAGAAAGATTTACTTGAGAGGAGGTCTTGGTGTTGGTGCTTTCAGAAGAA 271 Query 259 TCTATGGAGGTAGCAAAAGAAATGGAAGTCGACCACCACATTTCTGTAAGAGCAGTGGTG 318 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 TTTATGGAGGTAGCAAAAGAAATGGAAGTCGACCACCACATTTCTGTAAGAGCAGTGGTG 331 Query 319 GTATTGCTCGCCATATTCTCCAACAGTTGGAGACAATGAGCATTGTCGAGCTCGACACTA 378 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 332 GTATTGCTCGCCATATTCTCCAACAGTTGGAGACAATGAGCATTGTCGAGCTTGACACTA 391 Query 379 AAGGAGGAAGAAGAATCACTTCAAGCGGCCAACGGGATTTGGATCAGGTCGCTGGACGTA 438 ||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||| Sbjct 392 AAGGAGGGAGAAGAATCACTTCGAGCGGTCAACGGGATTTGGATCAGGTTGCTGGGCGTA 451 Query 439 TTGCAGCTGAATCATGAAGAGCTGTTGTTCTCCTTAT 475 ||||||||||||||||||||||||||||||||||||| Sbjct 452 TTGCAGCTGAATCATGAAGAGCTGTTGTTCTCCTTAT 488 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22605366150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5