BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941038

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15520.1 | Symbols:  | Ribosomal protein S19e family protein...   778    0.0  


> AT5G15520.1 | Symbols:  | Ribosomal protein S19e family protein 
| chr5:5037021-5038172 REVERSE LENGTH=689
Length=689

 Score =  778 bits (421),  Expect = 0.0
 Identities = 445/457 (97%), Gaps = 0/457 (0%)
 Strand=Plus/Plus

Query  19   GTGCAATGGCGACTGGTAAAACCGTGAAAGATGTTTCTCCTCACGATTTCGTGAAGGCTT  78
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  32   GTGAAATGGCGACTGGTAAAACCGTGAAAGATGTTTCTCCTCACGATTTCGTGAAGGCTT  91

Query  79   ACGCTTCTCACCTCAAGCGATCTGGAAAGATCGAGCTTCCTCTATGGACAGACATTGTGA  138
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  92   ACGCTTCTCACCTCAAGCGATCTGGAAAGATTGAGCTTCCTCTATGGACAGACATTGTGA  151

Query  139  AGACTGGTCGTTTGAAGGAGCTTGCTCCATACGACCCTGATTGGTACTATATTAGAGCTG  198
            ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  152  AGACTGGTCGTTTGAAGGAGCTTGCTCCATATGACCCTGATTGGTACTACATTAGAGCTG  211

Query  199  CTTCTATGGCCAGAAAGATTTACCTGAGAGGAGGTCTTGGTGTTGGTGCTTTCAGAAGAA  258
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  212  CTTCTATGGCCAGAAAGATTTACTTGAGAGGAGGTCTTGGTGTTGGTGCTTTCAGAAGAA  271

Query  259  TCTATGGAGGTAGCAAAAGAAATGGAAGTCGACCACCACATTTCTGTAAGAGCAGTGGTG  318
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  TTTATGGAGGTAGCAAAAGAAATGGAAGTCGACCACCACATTTCTGTAAGAGCAGTGGTG  331

Query  319  GTATTGCTCGCCATATTCTCCAACAGTTGGAGACAATGAGCATTGTCGAGCTCGACACTA  378
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  332  GTATTGCTCGCCATATTCTCCAACAGTTGGAGACAATGAGCATTGTCGAGCTTGACACTA  391

Query  379  AAGGAGGAAGAAGAATCACTTCAAGCGGCCAACGGGATTTGGATCAGGTCGCTGGACGTA  438
            ||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| ||||
Sbjct  392  AAGGAGGGAGAAGAATCACTTCGAGCGGTCAACGGGATTTGGATCAGGTTGCTGGGCGTA  451

Query  439  TTGCAGCTGAATCATGAAGAGCTGTTGTTCTCCTTAT  475
            |||||||||||||||||||||||||||||||||||||
Sbjct  452  TTGCAGCTGAATCATGAAGAGCTGTTGTTCTCCTTAT  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22605366150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5