BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941040
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15530.1 | Symbols: BCCP2, CAC1-B | biotin carboxyl carrier ... 1177 0.0
> AT5G15530.1 | Symbols: BCCP2, CAC1-B | biotin carboxyl carrier
protein 2 | chr5:5038751-5040840 FORWARD LENGTH=1375
Length=1375
Score = 1177 bits (637), Expect = 0.0
Identities = 748/802 (93%), Gaps = 6/802 (1%)
Strand=Plus/Plus
Query 11 CTGTCTCAACAATGGCGTCATTGTCGGTACCTTGCGCCAAGATCTGTGCCCTGAACAGGC 70
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 194 CTGTCTCAACAATGGCGTCATTGTCGGTACCTTGCGTCAAGATCTGTGCTCTGAACAGGC 253
Query 71 GGGTCGGAACTCTTCCTGGAATCTCGACTCAACGATCGCAGCCGCAACCCAATGGCATCT 130
|||||||| |||| ||||||||||| |||||| ||| |||||||||||||||||| ||||
Sbjct 254 GGGTCGGATCTCTCCCTGGAATCTCTACTCAAAGATGGCAGCCGCAACCCAATGGGATCT 313
Query 131 CCTTTCCCTCCCATGTTTCTCAGAATCAGTCTACATTCTGGAGGTTGCGTGCAACAACCA 190
||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 314 CCTTTCCCTCCGATGTTTCTCAGAATCATTCTGCATTCTGGAGGTTGCGTGCAACAACTA 373
Query 191 ATGAGGTTGTTTCTAACTCTACCCCAATGACTAATGGTGGGTATATGAACGGAAAAGTGA 250
||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 374 ATGAGGTTGTTTCTAACTCCACTCCAATGACTAATGGTGGGTATATGAACGGAAAAGCGA 433
Query 251 AAACCAATGATCCCGAACCCGCCGAGCTCTCTGAATTTATGGCTAAAGTCTCAGGTCTTC 310
||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 434 AAACCAATGTTCCTGAACCCGCCGAGCTCTCTGAATTTATGGCTAAAGTCTCTGGTCTTC 493
Query 311 TTAAGCTTGTGGATTCAAAAGACATAGTGGAACTTGAACTGAAGCAACTCGACTGTGAGA 370
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 494 TTAAGCTTGTGGATTCAAAAGACATAGTGGAACTTGAACTAAAGCAGCTCGACTGTGAGA 553
Query 371 TCGTTATTCGAAAGAAGGAAGCTTTACAGCAAGCTGTACCACCAGCTCCAGTTTATCACT 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TCGTTATTCGAAAGAAGGAAGCTTTACAGCAAGCTGTACCACCAGCTCCAGTTTATCACT 613
Query 431 CGATGCCTCCTCCAATGACAGACCTCTCAATGCCTCCAGCTCAACCAGTGGctcctcctc 490
| ||||||||| |||| ||||| | |||||||||||||||||||||||||||| |||||
Sbjct 614 CAATGCCTCCTGTAATGGCAGACTTTTCAATGCCTCCAGCTCAACCAGTGGCTCTTCCTC 673
Query 491 cttctcctcctccttcctcAACCCCTGCAACAGCAAAACCAACAACCACCCCATCCTCAT 550
|||||||| ||||| ||||||| ||||||||||||||||||||| || |||||||||| |
Sbjct 674 CTTCTCCTACTCCTACCTCAACGCCTGCAACAGCAAAACCAACATCCGCCCCATCCTCGT 733
Query 551 CTCATCCTCCACTCAAGAGTCCTATGGCTGGTACTTTCTACAGATCTCCTGGACCTGGTG 610
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 734 CTCATCCTCCACTCAAGAGTCCCATGGCTGGTACTTTCTATAGATCTCCTGGACCCGGTG 793
Query 611 AACCACCTTTTGTCAAGGTTGGAGACAAGGTGCAGAAAGGTCAAGTTGTTTGCATTATCG 670
|||| |||||||| ||||||||||| ||||| ||||| |||||| ||||||| |||||||
Sbjct 794 AACCCCCTTTTGTAAAGGTTGGAGATAAGGTACAGAAGGGTCAAATTGTTTGTATTATCG 853
Query 671 AAGCTATGAAACTGATGAACGAGATTGAGGCTGAGAAGTCAGGAACCATCACTG-AATTA 729
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 854 AAGCTATGAAACTGATGAACGAGATTGAGGCTGAGAAGTCAGGAACCATCA-TGGAACTA 912
Query 730 CTGGCTGAAGATGGAAAACCAGTTAGCATTGACACGCCTCTGTTTGTCATC-CTACCTT- 787
||||||||||||||||||||||| ||| ||||||||||||| ||||||||| | |||||
Sbjct 913 CTGGCTGAAGATGGAAAACCAGTCAGCGTTGACACGCCTCTTTTTGTCATCGC-ACCTTG 971
Query 788 AAATCGAAGAAGTATCCTTTTA 809
||| |||||||| |||||||||
Sbjct 972 AAA-CGAAGAAGGATCCTTTTA 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39383571248
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5