BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941044
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15570.1 | Symbols: | Bromodomain transcription factor | ch... 1744 0.0
> AT5G15570.1 | Symbols: | Bromodomain transcription factor |
chr5:5066375-5068199 FORWARD LENGTH=1582
Length=1582
Score = 1744 bits (944), Expect = 0.0
Identities = 1117/1198 (93%), Gaps = 21/1198 (2%)
Strand=Plus/Plus
Query 1 AAAGTTGTAATAAAGGTTGAATATGACCAATGGAGGCGGAGAGGGTGGAAGTCAGCGGAG 60
||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 212 AAAGTTGTAATAAAGTTTGAATATGATCAATGGAGGTGGAGAGGGTGGAAGTCAGCGGAG 271
Query 61 AGAACTACAAGGGAAAAGAAGTATTTCTCGTGGCAGTGATTTTGCGTACGCCGTCGTTAG 120
|||||||||||||||||||||||| |||||||||| |||||||||||||||| | | |||
Sbjct 272 AGAACTACAAGGGAAAAGAAGTATGTCTCGTGGCAATGATTTTGCGTACGCCCTAGCTAG 331
Query 121 AATGGCCGCGGCGCAGATATGCGAGAGCGTTGAGATTAGCAGTTATCAGG-A--ATCACA 177
||||||| |||||||||||||||||||||||||||||| |||||| |||| | ||||||
Sbjct 332 AATGGCCACGGCGCAGATATGCGAGAGCGTTGAGATTAACAGTTACCAGGAATCATCACA 391
Query 178 GACACGCGAAGGTTTGAGATTCAGTTCTTTTCAAGAGACTGCTCTTGAAACACTAACTGA 237
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 392 GTCACGCGAAGGTTTGAGATTCAGTTCTTTTCAAGAGACTGCTCTTGAAACACTAACCGA 451
Query 238 TGTAGTGATTCAATACATTCAAAACATTGGGAAGACTGCCA-AGTTCTATGCTAATATGG 296
||||||||| ||||||||||| |||||||||||||||| || |||| |||| ||||||||
Sbjct 452 TGTAGTGATCCAATACATTCAGAACATTGGGAAGACTG-CACAGTTTTATGTTAATATGG 510
Query 297 CTGGTAGAGTAGAAGGTAATGCTCTGGACATTGTTCAAGCACTGGAGGATTTGGGATCTG 356
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 511 CTGGTAGAGTAGAAAGTAATGCTCTGGATATTGTTCAAGCACTGGAGGATTTGGGATCTG 570
Query 357 GGTTGGGTTTCGACGGTGCTCATGATGTTGAGCATTGTCTTGCTGATTCTGGTGTCGTCA 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GATTGGGTTTCGACGGTGCTCATGATGTTGAGCATTGTCTTGCTGATTCTGGTGTCGTCA 630
Query 417 AGGATATTATTCGTTATACAGGAGAAGCGGAGGAGATTCCTTTCGTTTATTCTCTTCCCC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AGGATATTATTCGTTATACAGGAGAAGCGGAGGAGATTCCTTTCGTTTATTCTCTTCCCC 690
Query 477 GTTTCCCTTTTAACAGAGGAAAAAGACCAGCTCCTAGCTTTTCCGGGATTGGAGCAGAGC 536
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 691 GTTTCCCTTTTAACAGAGGAAAAAGACCAGCTCCTAGCTTTTCCGATATTGGAGTAGAGC 750
Query 537 CACCAGATGAGCATATTCCAGTTTGGCTTCCTGCATTTCCTGAAACCAAGATGTCTAACG 596
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 751 CACCAGATGAGCATATTCCTGTTTGGCTTCCTGCGTTTCCTGAAACCAAGATGTCTAACG 810
Query 597 GGTCAGAGGAGACTAATGTTGACAAAATAGAAGGGGATGTGCAAAGTAGAGAAAATGGAC 656
|||||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 811 GGTCAGAGGAGATTAATGTTGACAAAATAGAAAGGGATGTGCAGAGTAGAGATAATGGAT 870
Query 657 CATCTTTG-TCGAGTATGCAGCAGTCTGTCGATGTTGATAGGTTAAAAGTTCAGAAATCC 715
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CATCTTTGAT-GAGTGTGCAGCAGTCTGTCGATGTTGATAGGTTAAAAGTTCAGAAATCC 929
Query 716 ATGGATCAAAAGGATGTTCAGAAACCAACAGAGGAACCGGAACCGGAAGGTAACCCATTT 775
||||||||||||||||||||||| |||| ||||||||||||| || ||||||||||
Sbjct 930 ATGGATCAAAAGGATGTTCAGAAGCCAATAGAGGAACCGGAA--GG----TAACCCATTT 983
Query 776 CTTGCTGCACCACTTTGGGTTGGAGAGAAGAACGTGTCAC-GT---GTGTA-TCCT-CC- 828
|||||||||||| ||||||||||||||||||| ||||||| || |||| | | ||
Sbjct 984 CTTGCTGCACCAATTTGGGTTGGAGAGAAGAATGTGTCACTGTCACGTGTGGTT-TGCCC 1042
Query 829 GTCAGAACTTACGAAAGAAGAAATTAGCACTAACCACGTTCCTGAGAAACATATGAGCAA 888
|||||| |||| ||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 1043 GTCAGAGCTTAGGAAAGAAGAAATTAGTACCAACCACCTTCCTGAGAAACATATGAGCAT 1102
Query 889 GGGCCATCACATTCCAGCAATTGAGGCATATGCTCTATCTGATAAGATCAACGACAAGAA 948
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GAGCCATCACATTCCAGCACTTGAGGCATATGCTCTATCTGATAAGATCAACGACAAGAA 1162
Query 949 CAGATTAGCTGAAACGGAAGATGGACAGAAAAGAGATGGTGGAAGAACAGAACGAGCTTT 1008
||||||||||| || |||||||| ||||||||||||||||| ||||||| || |||||||
Sbjct 1163 CAGATTAGCTGGAATGGAAGATGAACAGAAAAGAGATGGTGCAAGAACACAAGGAGCTTT 1222
Query 1009 GCTTCGTTTCAAGATTGGGACTCGAAAAGCCTCGGTGTGTTGGACGTTAAATCAGTGCTT 1068
||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||
Sbjct 1223 GCTTCGTTTCAAGATTGGGACTCGAAAAGCCTCTGAATGTTGGAAGATAAATCAGTGCTT 1282
Query 1069 AGAGGAAAAGGGTTGGTTTCAAGAGGATGGAGACAAGAGGGAGAAGAAGGTAGAACGAGA 1128
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1283 AGAGGAAAAGGGTTGGTTTAAAGAGGATGGAAACAAGAGGGAGAAGAAGGTAGAACGCGA 1342
Query 1129 AGAAAAGCGCGAAAGTATTGACGCAGATGTAAAATAGGTATTTTGTCATTTAGAATTT 1186
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 AGAAAAGAGCGAAAGTATTGACGCAGATGTAAAATAGGTATTTTGTCATTTAGAATTT 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5