BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941046

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48500.2 | Symbols: PDE312, PTAC10 | Nucleic acid-binding, O...   219    2e-56


> AT3G48500.2 | Symbols: PDE312, PTAC10 | Nucleic acid-binding, 
OB-fold-like protein | chr3:17962163-17965613 FORWARD LENGTH=2345
Length=2345

 Score =  219 bits (118),  Expect = 2e-56
 Identities = 157/176 (89%), Gaps = 2/176 (1%)
 Strand=Plus/Plus

Query  2     AGATTAGCACA-CAAGAGAGAATGAAGGATGCACACAACAAATCCATTGTTGGGAAAGGC  60
             ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1854  AGATTAGCA-AGCAAGAGAGAATGAAGGATGCACACAACAAATCCATTGTTGGGAAAGGC  1912

Query  61    AACGTGTGGTATGATATGTCTTATGATGATGCTATTAAGCAGACATTAGAGAAAGGAAAA  120
             || ||||||||||| |||||||| |||||||| |||||||||||| |||||||| |||||
Sbjct  1913  AATGTGTGGTATGACATGTCTTACGATGATGCGATTAAGCAGACAATAGAGAAAAGAAAA  1972

Query  121   GTTGAGCCTAACTTGGCGACTCAAGAAGACGAAACAGAGTCTGAAAAAGAAAAAGA  176
             |  | | ||| |||||||| ||||||||| ||||||||||| ||  ||||| ||||
Sbjct  1973  GAAGGGTCTACCTTGGCGAGTCAAGAAGAAGAAACAGAGTCAGAGGAAGAAGAAGA  2028



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15030056951


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5