BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941048
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16143.1 | Symbols: IMPA-2 | importin alpha isoform 2 | chr4... 291 9e-78
AT1G12330.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 193 3e-48
AT5G63810.1 | Symbols: BGAL10 | beta-galactosidase 10 | chr5:25... 156 3e-37
> AT4G16143.1 | Symbols: IMPA-2 | importin alpha isoform 2 | chr4:9133937-9137353
REVERSE LENGTH=2217
Length=2217
Score = 291 bits (157), Expect = 9e-78
Identities = 182/194 (94%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 359 AGAA-TTGGGGAGTTTGCCTTCAATGGTTGGTGGTGTTTGGTCAGATGATAGAAGTTTAC 417
|||| |||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 440 AGAAGTTGGAGAGTTTGCCTGCTATGGTTGGTGGTGTTTGGTCAGATGATAGAAGTTTAC 499
Query 418 AGCTTGAAGCAACTACTCAGTTCCGGAAGTTGCTTTCTATTGAGTGTAATCCTCCGATTG 477
|||||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 500 AGCTTGAAGCGACTACTCAGTTCCGGAAATTGCTTTCTATTGAGCGTAGTCCTCCGATTG 559
Query 478 AAGAGGTGATTCAAGCTGGTGTTGTGCCTCGGTTTGTGGAATTTCTCACGAGAGAGGATT 537
|||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 560 AAGAAGTGATTGATGCTGGTGTTGTGCCTCGGTTTGTGGAATTTCTCACTAGAGAGGATT 619
Query 538 ATCCACAGCTTCAG 551
||||||||||||||
Sbjct 620 ATCCACAGCTTCAG 633
> AT1G12330.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1);
Has 249 Blast hits to 249 proteins in 27
species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14;
Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI
BLink). | chr1:4194658-4196749 FORWARD LENGTH=1655
Length=1655
Score = 193 bits (104), Expect = 3e-48
Identities = 120/128 (94%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 120 ttcatctctAGCCCCAATCTGATAATCAAATCCATCTTTCAATCTCTCACACGGAGAAGT 179
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 394 TTCATCTCTAGCCCCAATCTCATAATCAAATCCATCTTCCAATCTCTCACACGGAGAAGC 453
Query 180 CCCAAACCTTCCTCTACGACGGCGGCGCTTCCACCGCGCTCTTCCTCCTCCTCCGCCGCC 239
||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 454 CCCAAACCTTCCTCTGCAACGGCGGCGCTTCCACCGCGCTCTTCCTCATCCTCCGCCGCA 513
Query 240 GACGCTTC 247
|| |||||
Sbjct 514 GATGCTTC 521
> AT5G63810.1 | Symbols: BGAL10 | beta-galactosidase 10 | chr5:25537074-25541529
FORWARD LENGTH=2608
Length=2608
Score = 156 bits (84), Expect = 3e-37
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 550 AGCATTACATGGAGAGTTTCACGACGTATATAGTAAACCTGTTGAAAAAAGAGAAGCTTT 609
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 626 AGCATTACATGGAGAGTTTCACGACGTATATAGTAAACCTGTTGAAACAAGAGAAGCTTT 685
Query 610 TCGCACCACAGGGCGGTCCAATTATCTTGTCTCAGG 645
| ||||| |||||||||||||| |||||||||||||
Sbjct 686 TTGCACCTCAGGGCGGTCCAATAATCTTGTCTCAGG 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5