BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941059
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15720.1 | Symbols: GLIP7 | GDSL-motif lipase 7 | chr5:51245... 1853 0.0
> AT5G15720.1 | Symbols: GLIP7 | GDSL-motif lipase 7 | chr5:5124525-5126181
REVERSE LENGTH=1280
Length=1280
Score = 1853 bits (1003), Expect = 0.0
Identities = 1093/1137 (96%), Gaps = 4/1137 (0%)
Strand=Plus/Plus
Query 1 GATAAAGATAGTAACCAAGCATGAAGAGTTTGTTGATTTGTGTTGTGTTGTTAGAGCTTG 60
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 7 GATAAAGATAGTAACCAAGCATGAAAAGTTTGTTGATTTGTCTTGTGTTGTTAGAGCTTG 66
Query 61 TCTGGTTTGGCAATGGACAATCTAGAGATCATCAACCTCTTGCTCCAGCTTTCTTTGTCT 120
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TCTGGTTAGGCAATGGCCAATCTAGAGATCATCAACCTCTTGCTCCAGCTTTCTTTGTCT 126
Query 121 TTGGAGATTCTTTAGTTGATAGTGGAAACAACAATTACATTCCAACTCTCGCACGAGCTA 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 127 TTGGAGATTCTTTAGTTGATAGTGGAAACAACAATTACATTCCAACTCTTGCACGAGCTA 186
Query 181 ATTATTTCCCTTATGGAATTGATTTTGGCTTCCCCACTGGCCGTTTCTGCAATGGCCGTA 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 187 ATTATTTCCCTTATGGAATTGATTTTGGCTTCCCCACTGGTCGTTTCTGCAATGGCCGTA 246
Query 241 CAGTTGTTGATTATGGAGCAACGTACCTCGGCTTGCCATTGGTGCCACCATACTTATCTC 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CCGTTGTTGATTATGGAGCAACGTACCTCGGCTTGCCATTGGTGCCACCATACTTATCTC 306
Query 301 CTTTATCCATTGGGCAAAACGCCTTTA-GAGGGGTTAACTATGCATCTGCAGCAGCTGGG 359
||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 307 CTTTATCCATTGGGCAAAATGCC-TTACGAGGGGTTAACTACGCATCTGCAGCAGCTGGG 365
Query 360 ATTTTAGATGAAACCGGTCGACATTATGGAGCAAGAACTACATTTAATGGACAGATATCG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ATTTTAGATGAAACCGGTCGACATTATGGAGCAAGAACTACATTTAATGGACAGATATCG 425
Query 420 CAGTTTGAGATTACAATCGAGTTACGTCTCCGACGTTTCTTTCAAAACCCTGCAGATCTG 479
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 426 CAGTTTGAGATTACGATCGAGTTACGCCTCCGGCGTTTCTTTCAAAACCCTGCAGATCTG 485
Query 480 AGCAAGTATCTTGCAAAATCGATAATTGGGATCAATATAGGAAGCAATGATTACATCAAC 539
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 486 AGAAAGTATCTTGCAAAATCGATAATTGGGATCAATATAGGAAGCAATGACTATATCAAC 545
Query 540 AACTACCTTATGCCTGAGAGATACTCCACCAGCCAAATCTACAGTGGAGAAGACTATGCA 599
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 546 AACTACCTTATGCCTGAGAGATACTCCACCAGCCAAACCTACAGTGGAGAAGATTATGCA 605
Query 600 GATCTCCTGATCAAGACTCTCTCAGCTCAAATATCAAGACTATACAACTTAGGCGCACGA 659
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 606 GATCTCTTGATCAAGACTCTCTCAGCTCAAATATCCAGACTATACAACTTAGGTGCAAGA 665
Query 660 AAAATGGTGTTAGCTGGGTCAGGACCATTAGGTTGCATACCGAGTCAATTATCTATGGTA 719
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 666 AAAATGGTGTTAGCTGGGTCAGGACCATTAGGTTGCATACCTAGTCAGCTATCTATGGTA 725
Query 720 AGC-GGCAACAACAACAGCGGGTGCGTAACAAAGATCAACAATATGGTCTCAATGTTCAA 778
| | |||||||||| ||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 726 A-CTGGCAACAACACCAGCGGGTGTGTGACAAAAATCAACAATATGGTTTCAATGTTCAA 784
Query 779 TAGCCGACTGAAAGATCTAGCAAATACTCTCAACACAACTCTTCCAGGATCTTTCTTTGT 838
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 785 TAGCCGTCTGAAAGATCTAGCAAATACTCTCAACACAACTCTGCCAGGATCTTTCTTTGT 844
Query 839 CTATCAAAACGTCTTTGATCTATTTCATGATATGGTTGTGAATCCCTCTAGATATGGTCT 898
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 845 CTATCAAAACGTCTTTGATCTATTTCATGATATGGTTGTGAATCCTTCTAGATATGGTCT 904
Query 899 TGTAGTATCAAACGAAGCGTGTTGCGGTAACGGGAGATATGGAGGAGCCTTAACATGCCT 958
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 905 TGTAGTATCAAACGAAGCGTGCTGCGGTAACGGGAGATATGGAGGAGCCTTAACATGCCT 964
Query 959 TCCATTGCAGCAACCGTGCTTGGACAGGAATCAATATGTCTTTTGGGATGCATTTCATCC 1018
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 965 TCCATTGCAGCAACCTTGCTTGGATAGGAATCAATATGTCTTTTGGGATGCATTTCATCC 1024
Query 1019 AACAGAAACTGCCAACAAAATCATAGCTCACAATACCTTCAGCAAGTCTGCAAACTACTC 1078
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1025 AACAGAAACTGCCAACAAAATAATAGCTCACAATACCTTCAGCAAGTCTGCAAACTACTC 1084
Query 1079 CTACCCTATCAGTGTCTATGAATTGGCTAAACTGTAGAGATATGTGTCTCAAAGCTA 1135
|||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||
Sbjct 1085 CTACCCTATCAGTGTCTATGAATTAGCTAAATTGTAGAGAAATGTATCTCAAAGCTA 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5