BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941061
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15730.2 | Symbols: CRLK2, AtCRLK2 | Protein kinase superfam... 2259 0.0
> AT5G15730.2 | Symbols: CRLK2, AtCRLK2 | Protein kinase superfamily
protein | chr5:5130503-5133187 FORWARD LENGTH=1656
Length=1656
Score = 2259 bits (1223), Expect = 0.0
Identities = 1306/1347 (97%), Gaps = 2/1347 (0%)
Strand=Plus/Plus
Query 1 TGGTTTGTAAAATGATATCAAAATGGTGAATAGAAGTGATTTGGTGGTGATTGGCATCTC 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGGTTTGAAAAATGATATCAAAATGGTGAATAGAAGTGATTTGGTGGTGATTGGCATCTC 242
Query 61 GGTTGGGCTTGCACTTGGTCTCTTGCTCGCTCTGCTTTTGTTCTTCGCCATAAAATGGTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGTTGGGCTTGCACTTGGTCTCTTGCTCGCTCTGCTTTTGTTCTTCGCCATAAAATGGTA 302
Query 121 CAATAACCGCTCTCACCTAAGGCGATGCGCTAATGAACAGGATACCCCGACTCTACCTGT 180
| || |||||||||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 303 CTATGGCCGCTCTCACCTCAGGCGATGCGCTAATGAACAGAATTCCCCGACTCTACCTGT 362
Query 181 TCACACTGCTAAAAGAGGCT-TAGTAATCCCTGATGATAGCGCCAACACAGAATCGTCAC 239
|||||||||||||||||| | ||||||||||||||||||| || ||||||||||||||||
Sbjct 363 TCACACTGCTAAAAGAGG-TGTAGTAATCCCTGATGATAGAGCAAACACAGAATCGTCAC 421
Query 240 AGCCACCTGAGAATGCAGCACCAACTCAACATCAGCCATGGTGGAACAATAATAACAAAG 299
||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||
Sbjct 422 AGCCACCTGAGAATGGAGCACCAACTCAACATCAGCCATGGTGGAACAACCACACCAAAG 481
Query 300 ATCTCACTGTATCTGCATCCGGCATACCTAGATATCACTACAAGGATATTCAGAAAGCAA 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 482 ATCTCACTGTATCTGCATCCGGCATACCTAGATATAACTACAAGGATATTCAGAAAGCAA 541
Query 360 CACAAAATTTCACAACCGTTCTAGGACAAGGATCTTTTGGTCCTGTGTACAAAGCGGTTA 419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 542 CACAAAATTTCACAACCGTTCTAGGACAAGGATCTTTTGGTCCTGTCTACAAAGCGGTTA 601
Query 420 TGCCCAATGGAGGATTAGCTGCAGCGAAAGTTCATGGCTCTAATTCAAGTCAAGGAGATA 479
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 602 TGCCCAATGGAGAATTAGCTGCAGCGAAAGTTCATGGCTCTAATTCAAGTCAAGGAGACA 661
Query 480 GAGAGTTTCAAACCGAGGTATCTTTACTTGGGAGGCTGCATCACCGAAATCTTGTGAACT 539
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 662 GAGAGTTTCAAACCGAGGTATCTTTACTTGGGAGACTGCATCACCGGAATCTTGTGAACT 721
Query 540 TGACAGGATACTGTGTCGATAAAAGTCACCGGATGTTGATCTATGAGTTCATGAGTAATG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TGACAGGATACTGTGTCGATAAAAGTCACCGGATGTTGATCTATGAGTTCATGAGTAATG 781
Query 600 GAAGTTTGGAGAATCTTTTGTATGGCGGCGAAGGAATGCAAGTCTTGAATTGGGAAGAGC 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 782 GAAGTTTGGAGAATCTTTTGTATGGCGGTGAAGGAATGCAAGTCTTGAATTGGGAAGAGC 841
Query 660 GGCTTCAAATCGCTCTTGACATCTCCCACGGCATTGAATACCTTCACGAAGGGGCCGTGC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 842 GGCTTCAAATCGCTCTTGACATCTCCCACGGCATTGAATACCTTCACGAAGGGGCCGTAC 901
Query 720 CGCCAGTTATTCACCGTGATCTTAAGTCAGCAAACATATTGTTAGATCACTCCATGAGAG 779
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 902 CGCCAGTTATTCACCGTGATCTTAAGTCAGCAAACATTTTGTTAGATCATTCCATGAGAG 961
Query 780 CTAAGGTTGCGGATTTCGGGTTGTCGAAAGAGATGGTTTTAGATAGAATGACTTCCGGAT 839
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CTAAGGTCGCGGATTTCGGGTTGTCGAAAGAGATGGTTTTAGATAGAATGACTTCCGGAT 1021
Query 840 TGAAGGGTACTCACGGATACATGGATCCAACATACATTTCGACTAACAAATACACAATGA 899
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1022 TGAAGGGTACTCACGGCTACATGGATCCAACATACATTTCGACTAACAAATACACGATGA 1081
Query 900 AGAGCGACATTTATAGTTTCGGTGTCATCATTCTTGAGCTCATTACTGCAATCCATCCCC 959
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 AGAGCGACATTTACAGTTTCGGTGTCATCATTCTTGAGCTCATTACTGCAATCCATCCCC 1141
Query 960 AACAGAATCTGATGGAATACGTCAACCTGGCTTCGATGAGTCCAGATGGTATCGACGAAA 1019
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AACAGAATCTGATGGAATACATCAACCTGGCTTCGATGAGTCCAGATGGTATCGACGAAA 1201
Query 1020 TACTCGATCAGAAACTAGTGGGAAATGCAAGCATTGAAGAAGTGAGGTTACTGGCGAAGA 1079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1202 TACTCGATCAGAAACTAGTGGGAAACGCAAGCATTGAAGAAGTGAGGTTACTGGCGAAGA 1261
Query 1080 TTGCAAACAGGTGTGTGCATAAGACACCAAGAAAAAGACCATCCATTGGAGAAGTCACAC 1139
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1262 TTGCAAACAGGTGTGTGCATAAGACACCAAGAAAAAGACCATCTATTGGAGAAGTAACAC 1321
Query 1140 AATTCATACTAAAGATCAAACAAGGTCGGTCTCGAGGAAGAAGACAGGACACGATGTCTT 1199
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1322 AGTTCATACTAAAGATCAAACAAAGTCGGTCTCGAGGAAGAAGACAGGACACGATGTCTT 1381
Query 1200 CATCATTTAGTGTTGGTTATGAGGAAGATCTGTCAAGGGTTATGAGCAGGATTAAGGATC 1259
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 CATCGTTTGGTGTTGGTTATGAGGAAGATCTGTCAAGGGTTATGAGCAGGATTAAGGATC 1441
Query 1260 AACATGTTGAGTTAGGGTTATTGGCTGGTGTTAAGGAAGAAAATCATCAAGAGAGGAACA 1319
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1442 AGCATGTTGAGTTAGGGTTATTGGCTGGTGTTAAGGAAGAGAATCATCAAGAGAGGAACA 1501
Query 1320 TTGGAACAACATAGTAACTCTTTACTT 1346
||| |||||||||||||||||||||||
Sbjct 1502 TTGCAACAACATAGTAACTCTTTACTT 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5