BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941065
Length=491
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15770.1 | Symbols: AtGNA1, GNA1 | glucose-6-phosphate acety... 675 0.0
> AT5G15770.1 | Symbols: AtGNA1, GNA1 | glucose-6-phosphate acetyltransferase
1 | chr5:5144093-5144542 REVERSE LENGTH=450
Length=450
Score = 675 bits (365), Expect = 0.0
Identities = 418/444 (94%), Gaps = 2/444 (0%)
Strand=Plus/Plus
Query 21 ATGGCGGAGACATTCAAGATCCGAAGACTAGAGATCTCCGATAAGAGAAAAGGATTCATC 80
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGAGACATTCAAGATCCGAAAACTGGAGATCTCCGATAAGAGAAAAGGATTCATC 60
Query 81 GAGCTTCTAGGTCAACTCACCGTCACCGGATCAGTAACCGACGAAGAATTCGATCGGCGA 140
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GAGCTTCTAGGTCAACTAACCGTCACCGGATCAGTAACAGACGAAGAATTCGATCGGCGA 120
Query 141 TTCGAAGAAATCAGATCGTACGGAGACGATCACGTGATCTGCGTGATCGAAGATGAAACT 200
|||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 121 TTCGAAGAAATCAGATCGTATGGTGACGACCACGTGATCTGCGTGATCGAAGAAGAAACT 180
Query 201 TCGGGAAAAATCGCTGCTACGGGAAGTGTGATGATAGAGAAGAAGTTTTTGAGGAATTGT 260
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 181 TCGGGAAAAATCGCTGCTACGGGTAGTGTGATGATAGAGAAGAAGTTTCTGAGGAATTGC 240
Query 261 GGGAAAGTTGGGCACATTGAAGACGTTGTTGTGGATTCAAGGTTTCGCGGGAAACAATTG 320
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GGTAAAGCTGGGCACATTGAAGACGTTGTTGTGGATTCAAGGTTTCGCGGGAAACAGCTG 300
Query 321 GGGAAGAAAGTGGTGGAGTTTCTTATGGACCATAGCAAATCAATGGGTTGCTATAAGGTG 380
||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 301 GGGAAGAAAGTTGTTGAGTTTCTTATGGATCATTGCAAATCAATGGGTTGCTATAAGGTG 360
Query 381 ATTCTTGATTGTAGTGTGGAGAATAAAGTGTTTTATGAGAAATGTGGGATGA-TCAATAA 439
||||| ||||||||||||||||| |||||||| ||||||||||||||||||| | |||||
Sbjct 361 ATTCTAGATTGTAGTGTGGAGAACAAAGTGTTCTATGAGAAATGTGGGATGAGT-AATAA 419
Query 440 ATCGATTCAGATGTCTAAGTACTT 463
||||||||| ||||||||||||||
Sbjct 420 ATCGATTCAAATGTCTAAGTACTT 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23409112502
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5