BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941068
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box t... 1131 0.0
AT3G02310.1 | Symbols: SEP2, AGL4 | K-box region and MADS-box t... 802 0.0
> AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box
transcription factor family protein | chr5:5151334-5154154
REVERSE LENGTH=1436
Length=1436
Score = 1131 bits (612), Expect = 0.0
Identities = 660/682 (97%), Gaps = 7/682 (1%)
Strand=Plus/Plus
Query 2 AATTAAGGTAAC-AAAAGAAATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AATTAAGGTAACAAAAAGAAATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACA 427
Query 61 AAATCAACAGACAAGTAACGTTTGCAAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AAATCAACAGACAAGTAACGTTTGCAAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATG 487
Query 121 AATTGTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGC 180
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 488 AATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGC 547
Query 181 TCTACGAGTTTTGCAGCTCCTCCAACATGCTCAAGACACTGGATCGGTACCAGAAATGCA 240
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 548 TCTATGAGTTTTGCAGCTCCTCAAACATGCTCAAGACACTTGATCGGTACCAGAAATGCA 607
Query 241 GCTATGGCTCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAG 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAG 667
Query 301 AGTATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAGCGTCAACAGAGAAATCTTCTTG 360
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 668 AATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAGAAATCTTCTTG 727
Query 361 GGGAGGATCTAGGACCTCTGAATTCAAAGGAGTTAGAACAGCTTGAGCGTCAACTGGACG 420
|||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 728 GGGAGGATTTAGGACCTTTGAATTCAAAGGAGTTAGAGCAGCTTGAGCGTCAACTGGACG 787
Query 421 GTTCTCTCAAGCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCTGATC 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 788 GCTCTCTCAAGCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCGGATC 847
Query 481 TTCAAAATAAAGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTCAAAATAAAGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATG 907
Query 541 ATATGATTGGTGTGAGAAGTCATCATATGGGAGGAGGA------TGGGAAGGCGGTGAAC 594
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 908 ATATGATTGGTGTGAGAAGTCATCATATGGGAGGAGGAGGAGGATGGGAAGGTGGTGAAC 967
Query 595 AGAATGTTACCTACGCGCATCATCAAGTTCAGTCTCAGGGACTATACCAGCCTCTTGAAT 654
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 968 AGAATGTTACCTACGCGCATCATCAAGCTCAGTCTCAGGGACTATACCAGCCTCTTGAAT 1027
Query 655 GCAATCCAACTCTGCAAATGGG 676
||||||||||||||||||||||
Sbjct 1028 GCAATCCAACTCTGCAAATGGG 1049
Score = 180 bits (97), Expect = 2e-44
Identities = 109/115 (95%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 676 GGTATGATAATCCGGTATGCTCGGAGCAAATAACTGCGACAACACAAGCTCAGGCGCAGC 735
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1082 GGTATGATAATCCGGTATGCTCAGAGCAAATAACTGCGACAACCCAAGCTCAGGCGCAGC 1141
Query 736 AGGGAAACGGTTACATCCCAGGGTGGATGCTTTGAGAGTCATGTGATGTGATAAA 790
||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||
Sbjct 1142 AGGGAAACGGTTACATCCCGGGGTGGATGCTCTGAGAGTCATGTGCTGTGTTAAA 1196
> AT3G02310.1 | Symbols: SEP2, AGL4 | K-box region and MADS-box
transcription factor family protein | chr3:464279-467074 REVERSE
LENGTH=1415
Length=1415
Score = 802 bits (434), Expect = 0.0
Identities = 655/761 (86%), Gaps = 17/761 (2%)
Strand=Plus/Plus
Query 21 ATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAAATCAACAGACAAGTAACG 80
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 388 ATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGAACAAAATCAACAGACAAGTGACG 447
Query 81 TTTGC-AAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATGA-ATTGTCTGTTCTTTGTG 138
||||| ||| ||||| || |||||| |||| ||||||||||| || |||||||| || |
Sbjct 448 TTTGCTAAA-CGTAGAAATGGTTTGCTGAAAAAAGCTTATGAGCTT-TCTGTTCTCTGCG 505
Query 139 ATGCTGAGGT-TGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTACGAGTTTTGCAGC 197
||||||| || | |||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 506 ATGCTGAAGTCT-CTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTACGAGTTCTGCAGC 564
Query 198 TCCTCCAACATGCTCAAGACACTGGATCGGTACCAGAAATGCAGCTATGGCTCCATTGAA 257
||||||||||||||||||||||||| |||| ||||| || ||||||||||||||||||
Sbjct 565 ACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGTGTAGCTATGGCTCCATTGAA 624
Query 258 GTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAGAGTATCT-GAAGCTTAA 316
||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||| ||
Sbjct 625 GTCAACAACAAACCTGCTAAAGAGCTTGAGAACAGCTACAGAGAGTA-CTTGAAGCTGAA 683
Query 317 GGGTAGATATGAGAACCTTCAGCGTCAACAGAGAAATCTTCTTGGGGAGGATCTAGGACC 376
||||||||||| || || || ||||| ||||||||||||||||| |||||||| |||||
Sbjct 684 AGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTCTTGGAGAGGATCTTGGACC 743
Query 377 TCTGAATTCAAAGGAGTTAGAACAGCTTGAGCGTCAACTGGACGGTTCTCTCAAGCAAGT 436
|||||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 744 TCTGAATTCAAAGGAGCTAGAGCAGCTTGAGCGTCAACTAGACGGCTCTCTGAAGCAAGT 803
Query 437 TCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCTGATCTTCAAAATAAAGAGCA 496
||| | ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 804 TCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAAGGAGCA 863
Query 497 AATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATGATATGATTGGTGTGAG 556
|| |||||||| |||| ||||||||| ||||||||||||| |||||||| || |||||
Sbjct 864 TATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAGCTGGAAGATATGATCGGCGTGAG 923
Query 557 A-AGTCATCATATGGGAGGAGGATGGGAAGGCGGTGA--A-CAGAATGTTACCTACGCG- 611
| | ||| ||||| ||||||||||||||||| ||||| | |||||| || |||| | |
Sbjct 924 ACA-TCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAACAGAATATTGCCTATG-GA 981
Query 612 CATCATCAAGTTCAGTCTCAGGGACTATACCAGCCTCTTGAATGCAATCCAACTCTGCAA 671
|||| ||| | ||| ||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct 982 CATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAATGTGATCCCACTTTGCAA 1041
Query 672 ATGGGGTAT-GATAATCCGGTATGCTCGGAGCAAATAACTGCGACAACACAAGCTCAGGC 730
|| || ||| | | ||| || ||||| |||||||| ||| ||| |||| |||| |
Sbjct 1042 ATTGGATATAGCCA-TCCAGTGTGCTCAGAGCAAATGGCTGTGACGGTGCAAGGTCAGTC 1100
Query 731 GCAGCAGGGAAACGGTTACATCCCAGGGTGGATGCTTTGAG 771
|| || |||||||| |||||||| || |||||||| ||||
Sbjct 1101 CCAACAAGGAAACGGCTACATCCCTGGCTGGATGCTGTGAG 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5