BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941071
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15820.1 | Symbols: | RING/U-box superfamily protein | chr5... 957 0.0
> AT5G15820.1 | Symbols: | RING/U-box superfamily protein | chr5:5161724-5163030
FORWARD LENGTH=1307
Length=1307
Score = 957 bits (518), Expect = 0.0
Identities = 916/1095 (84%), Gaps = 79/1095 (7%)
Strand=Plus/Plus
Query 19 CAATGTCGTCGGCGAAACTTTTCGGTTGTTCTATTAACGTTGAA-GCAGAGGAAGAAgg- 76
||||||||||||||||||||||||||||||||||||||||| || | |||| || |||
Sbjct 62 CAATGTCGTCGGCGAAACTTTTCGGTTGTTCTATTAACGTT-AACGTTGAGGCAG-AGGA 119
Query 77 cggcggcggcggcggTGGTGGTAGCTC-AGTAGCCGTGGAGGTTTCTCGATCTGGTATCC 135
| | ||||| | ||||||||||| | | ||||||||||||||||||||||| ||
Sbjct 120 AGAAGAAGGCGGTGACGGTGGTAGCTCAACCA-ACGTGGAGGTTTCTCGATCTGGTAACC 178
Query 136 AACCGGGTTGCGAAGCTATGAGTTTGTCTAATCAGA-GAGAATTCGGTGATT-GCAATAC 193
|||||| ||| |||||||||||||| || ||||||| | ||| |||| | || |||||||
Sbjct 179 AACCGGATTGTGAAGCTATGAGTTTCTCCAATCAGATG-GAAATCGGCG-TTCGCAATAC 236
Query 194 ATATTTCAAATTTTTAGACTCGAATTCAGATTCTGAATCGGCTTCTATGGATGCAGAACC 253
||||| | | ||| |||| |||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 237 ATATTACCAGTTTCTAGAGTCGAATTCAGATTCTGGATCGGATTCTATGTATGCAGAACC 296
Query 254 CGAATTCATCGATTTCTTCGATCGAGAGTCGTACGAGGTCGACACGGTTAGTGAGTTTTG 313
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 297 TGAATTCATCGATTTCTTCGATCGAGAGTCGTACGAGGTCGACACGGTCCGTGAGGTTTG 356
Query 314 TTTAAGTTCGAATCAGAGGGCAT-GTACTTCAGGTTTTTTCAATATTTGGGAGGAGGATG 372
| |||||||||||||||||| | ||||| |||||| ||||||||||||||| ||||
Sbjct 357 TGTAAGTTCGAATCAGAGGG-TTAGTACTCCAGGTTATTTCAATATTTGGGATCAGGA-- 413
Query 373 TTGTAGAATTAGGGCTTGGAATCGGGTTAGCTTCAGGGTCAGGG-TCGGGTCAGTTACGT 431
|||||| |||||||||||||||||||||| |||| |||| ||| ||||||||||||| |
Sbjct 414 -TGTAGATTTAGGGCTTGGAATCGGGTTAGGTTCAAGGTC-GGGTTCGGGTCAGTTACCT 471
Query 432 GATGATTCAGGTAGGGTTTGGAATTCGGGTCGGGTCGAA-TCTGGTACGGGTTTTACTCC 490
| |||||||||| || || || | |||||||| | ||||| |||| |||||||
Sbjct 472 GGTGATTCAGGT--GG---GG--TT---G--GGGTCGAAGT-TGGTAGGGGTGTTACTCC 518
Query 491 GGTTGAGTATAATCTCTTTGTTGAAGAAGCTATGGTGGTTGATGAAGAATTGGAATGGGA 550
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 519 TGTTGAGTATAATCTCTTTGGAGAGGAAGCTATGGTGGTTGATGAAGTATTGGAATGGGA 578
Query 551 GAA-TTCGCATGACGGGATTAACTGGGTTCAAGAATCTGTCC-AAGTTAGTCT----GGA 604
||| ||| || ||| || ||| |||||||||| ||| || | | |||| | |||
Sbjct 579 GAATTTC-AATAACGCTATCCACTTGGTTCAAGAACCTG-CCTATGCTAGTATGGAGGGA 636
Query 605 G--GAAGAAGAAGTA-ATG--GAA-T--T--T--CCTTT--AGCATCCAATATTA-A-TG 648
| |||||||||| | | | ||| | | | ||| ||||||| || ||| | ||
Sbjct 637 GAAGAAGAAGAAGAAGAAGACGAAGTAGTAATGGAATTTGCAGCATCC-AT-TTATAGTG 694
Query 649 ATGCCTT---TCAT-GTCTTGTGGGATACCATGGCAGAA-TCTGCTCCTATGGATTTGGA 703
||| ||| || | |||| |||| |||| || || ||||||||||||||||||||
Sbjct 695 ATG-CTTGGGAAATATTATTGTACGATAACATGACA-AACTCTGCTCCTATGGATTTGGA 752
Query 704 TATTG-AGTATTGGCTAGATAGTATAAG-T-GA-A--CATCATGTAGATTACAATGCTAT 757
| ||| ||| ||||||||||||| | || | || | | || | | ||||||||||||||
Sbjct 753 TGTTGAAGT-TTGGCTAGATAGTGT-AGATGGATATGC-TCCTATGGATTACAATGCTAT 809
Query 758 TATAGGACAAATGTTTGATAACGAAG-CTGGAACCATGGGAAGTCCTCCTGCATCCAAAA 816
|||||||||||||||||||||| || |||||| || |||| |||||||||||||||||
Sbjct 810 CATAGGACAAATGTTTGATAACG-AGACTGGAATCAAAGGAACTCCTCCTGCATCCAAAA 868
Query 817 GTGTAGTAAATGATCTTCCTGATGTGGA-CTTTACCATTGAAGAATTGAGCAATGGGGA- 874
|||||||| ||| ||||||||||||||| | ||||||||||||||||||||| | | ||
Sbjct 869 GTGTAGTAGATGGTCTTCCTGATGTGGAGC-TTACCATTGAAGAATTGAGCAGT-GTGAG 926
Query 875 CATCGTTTGCGCGATCTGCAAAGATGAGGTTGTGGTTAAGGAGAAAGTTAAGAGGCTTCC 934
||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 927 CATTGTTTGCGCGATATGCAAAGATGAGGTTGTGTTTAAGGAGAAAGTTAAGAGGCTTCC 986
Query 935 TTGTAAGCATTACTTTCATGGAGAATGTATAATACCTTGGTTGGGGATAAGGAATACATG 994
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 987 TTGTAAGCATTACTATCATGGAGAGTGTATAATACCTTGGTTGGGGATAAGGAATACTTG 1046
Query 995 CCCGGTTTGTCGGTATGAGCTACCTACTGATGATCTGGAATATGAAAGGCATAGGAGAGC 1054
||||||||||||| ||||||| ||||||||||||||||| ||||||||| | ||||||||
Sbjct 1047 CCCGGTTTGTCGGCATGAGCTTCCTACTGATGATCTGGAGTATGAAAGGAAGAGGAGAGC 1106
Query 1055 ATGAAGGCGCGGTAG 1069
||||||||| |||||
Sbjct 1107 ATGAAGGCGTGGTAG 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5