BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941077
Length=2287
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15870.1 | Symbols: | glycosyl hydrolase family 81 protein ... 3441 0.0
> AT5G15870.1 | Symbols: | glycosyl hydrolase family 81 protein
| chr5:5182641-5184878 REVERSE LENGTH=2238
Length=2238
Score = 3441 bits (1863), Expect = 0.0
Identities = 2119/2244 (94%), Gaps = 12/2244 (1%)
Strand=Plus/Plus
Query 27 ATGTTGAAAAAAGTGAGGCGAAAAGTCAAAGTCTTAATCACCAAACCCTTTAAAAAGCCC 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTGAAAAAAGTGAGGCGAAAAGTCAAAGTCTTAATCACCAAACCCTTTAAAAAGCCC 60
Query 87 AAGAACACACCTTCAAGGCCTCCATCACCACCTCTTCCTCTTCCTCCTTCACCATCTCCA 146
||||||| ||| || | | ||| |||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAACAGACC-TCCA--TCACCACCACCACCTCTTCCTCTTCCTCCTTCACCATCTCCA 117
Query 147 CCACCGCCTCAAGAAATGTCTTCCTCAAGACAAAGAAACACTCCGTTTCTCTTCCCAAGA 206
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 118 CCACCGTCTCAACAAATGTCTTCCTCAAGACAAAAAAACACTCCGTTTCTCTTCCCAAGA 177
Query 207 TCCGATTCCTCTGTTTTACCCGACCCGTCTCGTTTCTTCAGCCACGATCTCCTCTCAACT 266
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 TCCGATTCCTCTGTTCTACCCGACCCGTCTCGTTTCTTCAGCCACGATCTCCTCTCATCT 237
Query 267 CCTCTCCCCACAAACTCATTCTTCCAAAACTTCACTCTCAAAAATGGCGACCAAGCTGAG 326
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 CCTCTCCCTACAAACTCTTTCTTCCAAAACTTCACTCTCAACAATGGCGACCAAGCTGAG 297
Query 327 TACTTTCACCCTTACATCATCAAACCCTCGACTTCATCTCTCTCCATCTCATACCCATCT 386
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 TACTTTCATCCTTACATCATCAAACCCTCGACTTCATCTCTCTCCATCTCCTACCCATCT 357
Query 387 CTCTCCCACAACTCTGCTTTCATCTACGAAGCTTTCAACGCCGACATCATCATAACCGGG 446
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 358 CTCTCCCACAACTCTGCTTTCATCTACGAAGCTTTCAACGCCGACATAACCATAACCGGG 417
Query 447 TCAGATGGACCCGACCCGCATTCTCGAAAAACTCATCTGATCTCTTCCTTCAGCGATCTC 506
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 418 TCAGATGGACCCGACCCGCATTCTCGTAAATCTCATCTCATCTCTTCCTTCAGCGATCTC 477
Query 507 GGCGTCACTCTCGATTTCCCTTCCTCTAATCTCAGATTCTTCCTCGTCAGAGGAAGCCCT 566
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 478 GGCGTCACTCTCGATTTCCCCTCCTCTAATCTCAGATTCTTCCTCGTTAGAGGAAGCCCT 537
Query 567 TTCATCACCTTCTCCGTTAACTCCTCCATCACAATCTCAACGATCCACGCCGTTTTATCA 626
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 TTCATCACCTTCTCCGTTAACTCCTCCATCACAATCTCAACGATCCACGCTGTTTTATCA 597
Query 627 CTTTCCGGTAACACCTCATCAACAAAGTACACCGCCAAGCTCAACAACAACCAAACATGG 686
||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 598 CTTTCCGGTAACACCTCTTCAACAAAGTACACCGTCAAACTCAACAACAACCAAACATGG 657
Query 687 CTAATCTACGCCTCTTCTCCGATCAATCTAACCAAAGACGGCGTTTCTTCCATCAATTGC 746
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 CTAATCTACGCCTCTTCTCCGATCAATCTAACCAAAGACGGCGTTTCTTCAATCAATTGC 717
Query 747 GGTGCTGGGTTTTCGGGTATTATCCGAATCGTCGCGTTACCAAATCCAGAT---T-TT-- 800
|||| ||||||||||||||||||||| ||||||| ||||||||||||| || | ||
Sbjct 718 GGTGATGGGTTTTCGGGTATTATCCGGATCGTCGTGTTACCAAATCCAAATCCGTATTTC 777
Query 801 GAATCAGTCCTCGACAGATTCAGTTGCTGTTACCCAGTTTCCGGTGACGCTGATTTCACA 860
||| || |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 778 GAAACAATCCTCGACGGATTCAGTTGCTCTTACCCAGTTTCCGGTGACGCTGATTTCACA 837
Query 861 AAGCCCTTTGCTTTAGAGTATAAATGGGACAAACGAGGCTATGGAGATCTTCTAATGCTA 920
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 AAGCCGTTTGCTTTAGAGTATAAATGGGAGAAACGAGGCTATGGAGATCTTCTAATGCTA 897
Query 921 GCTCATCCTCTTCATCTCAAGCTTTTATCAAACAACGATTGTTCAATCGCAGTTCTAGAC 980
||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 898 GCTCATCCTCTTCATCTCAAGCTTTTATCAACCAACGATTGTTCTATCACAGTTCTAGAC 957
Query 981 AATTTCAGATACAACAGCATCGACGGAGATTTAGTAGGTGTCGTCGGAGATTCATGGGTT 1040
||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 958 AATTTCAAATACAACAGCATCGACGGTGATTTAGTAGGTGTCATCGGAGATTCATGGGTT 1017
Query 1041 TTGAAACCAGACCCTGTTTCGGTAACGTGGCACTCTATCAAAGGAGTTCAAGAAGATTCT 1100
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTAAAACCAGACCCTGTTTCTGTTACGTGGCACTCTATCAAAGGAGTTCAAGAAGATTCT 1077
Query 1101 CACCAAGAGATTATCTCAGCTCTAATCAAAGACGTAAACGCTTTAGATTCATCAGCTCCG 1160
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1078 CACCAAGAGATCATCTCTGCTCTAATCAAAGACGTTAACGCTTTAGATTCATCAGCTGAG 1137
Query 1161 GTCACGGACTCTTCGTATTTTTACGCGAAATTGATCGCTAGAGCTGCGAGGTTAGCTTTA 1220
||||| ||||||||||||| ||||||||||||||||| || || |||||||||||||||
Sbjct 1138 GTCACCAACTCTTCGTATTTCTACGCGAAATTGATCGCGAGGGCGGCGAGGTTAGCTTTA 1197
Query 1221 ATCGCTGAAGAAGTTTGTTATCTCGATGTGATTCCAGCGATTAGAACTTACTTGAAGAAC 1280
|| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 1198 ATAGCTGAAGAAGTTTGTTATCTGGATGTTATTCCAAAGATTAGAACTTACTTGAAGAAC 1257
Query 1281 ATGATCGAGCCGTGGCTTAATGGAAGTTTCGGACCAAATGGGTTCTTATATGATCCTAAA 1340
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1258 ATGATCGAGCCGTGGCTTAATGGAAGTTTCGGACCAAATGGTTTCTTGTATGATCCAAAA 1317
Query 1341 TGGGGAGGTGTGATCACCAAGCTAGGATCGAGAGATTCAGGAGCAGATTTTGGGTTTGGG 1400
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 TGGGGAGGTGTGATTACTAAGCTAGGATCTAGAGATTCAGGAGCAGATTTTGGGTTTGGG 1377
Query 1401 ATTTATAATGATCATCATTATCATTTAGGCTACTTTGTTTATGCGATTGCTGTGCTTGCA 1460
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1378 ATTTACAATGATCATCATTATCATTTAGGTTACTTTGTTTATGCGATTGCTGTGCTTGCA 1437
Query 1461 AAGATTGATCCTTTATGGGGAAAGAGATACAAACCTCAAGCGTATACTTTAATGGCGGAT 1520
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1438 AAGATTGATCCTTTATGGGGGAAGAGATACAGACCTCAAGCGTATACTTTAATGGCGGAT 1497
Query 1521 TACATGACGTTGGGGAAGAAAGGAGCTAAGTCGAATTCGAATTACCCGCGTTTGAGATGT 1580
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1498 TACTTGACGTTGGGGAAGAAAGGAGCCAAGTCGAATTCGAATTACCCGCGTTTGAGATGC 1557
Query 1581 TTTGATCTTTTCAAGCTTCATTCTTGGGCTGGAGGGTTAACGGAGTTCGCCGACGGGAGG 1640
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1558 TTTGATCTTTTCAAGCTTCATTCTTGGGCTGGAGGGTTAACGGAGTTCGCTGACGGGAGG 1617
Query 1641 AATCAGGAGAGTACGAGTGAGGCTGTGAATGCGTATTACTCCGCCGCGTTGTTAGGGTTA 1700
||||| |||||||| || |||||||| ||||||||||||||||| || ||||| ||| ||
Sbjct 1618 AATCAAGAGAGTACAAGCGAGGCTGTCAATGCGTATTACTCCGCTGCTTTGTTGGGGCTA 1677
Query 1701 GCTTACGGTGATACACATCTGGTGGCGGCGGCTTCGACGGTTCTGACTCTGGAGATTCAC 1760
||||| || ||||||||| |||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 1678 GCTTATGGGGATACACATTTGGTGGCGGCTGCTTCGATGGTTCTGACGCTGGAGATTCAC 1737
Query 1761 GCCGCGAAAATGTGGTGGCAGGTGAAAGAAGACGACGCTATATACCCGCAAGACTTCACA 1820
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1738 GCGGCGAAAATGTGGTGGCAGGTGAAAGAAGACGACGCTATTTACCCGCAAGATTTCACA 1797
Query 1821 TCGGAGAATCGTGTGGTTGGAGTTTTATGGTCAACAAAGAGAGACAGTGGCTTATGGTTT 1880
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1798 TCGGAGAATCGTGTGGTTGGAGTGTTATGGTCAACAAAGAGAGACAGTGGCTTATGGTTC 1857
Query 1881 GCGCCTAAAGAGTGGAAAGAATGTCGCCTTGGGATACAGTTATTACCGTTACTTCCGGTA 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GCGCCTAAAGAGTGGAAAGAATGTCGCCTTGGGATACAGTTATTACCGTTACTTCCGGTA 1917
Query 1941 TCAGAAGTTCTATTTTCCGATGTAACATTCGTGAAGCAGCTCGTGAATTGGACAATGCCG 2000
||||||||||| || || || || ||||||||||| |||||||||||||||||||||||
Sbjct 1918 TCAGAAGTTCTGTTCTCGGACGTGACATTCGTGAAACAGCTCGTGAATTGGACAATGCCT 1977
Query 2001 GCGTTGGCGAGAGACAGCGTCGGAGAAGGGTGGAAAGGATTTGTGTATGCTTTGGAAAGT 2060
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GCTTTGGCTAGAGACAGCGTCGGAGAAGGGTGGAAAGGATTTGTGTATGCTTTGGAAAGT 2037
Query 2061 ATTTACGACAAAGATGGAGCAATGGAGAAGATTAAAGGATTAAATGGGTTTGATGATGGG 2120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 ATGTACGACAAAGATGGAGCAATGGAGAAGATTAAAGGATTAAATGGGTTTGATGATGGG 2097
Query 2121 AACTCTCTGAGTAATCTTTTGTGGTGGATTCACAGTAGAAACAatgatgatgatgatgat 2180
|||||| | |||||||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2098 AACTCTTTAAGTAATCTGTTGTGGTGGGTTCATAGTAGAAACAATGATGATGATGATGAT 2157
Query 2181 gatTATGAAGAAGACGATGAAGGTGGTTATGGTGGTCATGGCGGTGGCGGGAAGTATTGC 2240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 --T-ATGAAGAAGACGATGAAGGTGGTTATGGTGGTCATGGCGGTGGCGGGAAGTATTGT 2214
Query 2241 TCGTTTGGTCATTATTGTAATTAA 2264
|| ||||||||||||||| |||||
Sbjct 2215 TCCTTTGGTCATTATTGTCATTAA 2238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113503432245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5