BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941079
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15890.1 | Symbols: TBL21 | TRICHOME BIREFRINGENCE-LIKE 21 |... 520 1e-146
AT5G15880.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 73.1 3e-12
> AT5G15890.1 | Symbols: TBL21 | TRICHOME BIREFRINGENCE-LIKE 21
| chr5:5187587-5189348 REVERSE LENGTH=1681
Length=1681
Score = 520 bits (281), Expect = 1e-146
Identities = 363/401 (91%), Gaps = 12/401 (3%)
Strand=Plus/Plus
Query 331 GGTCTGGCATTTTCGCGGAGTTTTTCTCCTC-A-A-----AAGGTGACCCTTGGAACGAA 383
||||||||||||| ||||||||||||||| | | |||||| |||||||||||
Sbjct 1207 GGTCTGGCATTTTTAAGGAGTTTTTCTCCTCAACATTTCGAAGGTGGGGCTTGGAACGAA 1266
Query 384 GGAGGGGACTCTGTAGGGACACAACCTTACAGACGAAACGAAACAATTTCCGAAGGTGCG 443
|||||||||| |||| ||||||||||||||||| ||||||| || || ||| | | ||
Sbjct 1267 GGAGGGGACTGTGTACGGACACAACCTTACAGAAGAAACGAGACTATACCCG-A-G-GCA 1323
Query 444 GATCTCAAGGTTCACGACATTCAACTGAAGGAATTTAGAGCTTCAGAAGAAGATGGGAGG 503
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| |
Sbjct 1324 GATCTCAAGGTTCACGACATTCAAAGGGAGGAATTTAGAGCTGCAGAAGAAGATGGGATG 1383
Query 504 GAGAAGAGTGGTTTGAGACTGAAGTTAATGGACACCACACAGGCAATGCTATTGCTACCA 563
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1384 AAGAAGAGTGGTTTGAGACTGAAGTTAATGGACACGACACAGGCAATGCTATTGCGACCA 1443
Query 564 GATGGGCATCCTGGGAGATATGGCCATCTACAGAATGCAAATGTGACTTTAAGAAATGAC 623
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1444 GATGGGCATCCTGGGAGATATGGACATCTACAGAATCCAAATGTGACTTTAAGAAATGAC 1503
Query 624 TGTATTCATTGGTTCCTGCCTGGACCTATCGATACT-TGGAATGATATATTGCTACAAAT 682
||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1504 TGTATTCATTGGTGCCTGCCTGGACCTATCGATACTCTG-AATGATATATTGCTACAAAT 1562
Query 683 GATGAAGACAGAGAACTAGAAAGCATCCCTCAAGAATGAGT 723
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 1563 GATGAAGACAGATAACTAGAAAGCATCCCTCAAGAATGAGT 1603
Score = 200 bits (108), Expect = 1e-50
Identities = 140/155 (90%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 21 ATGGAGCTTCCTTTGTTTGCAATCCTTCAAAGAACACCAAAAGTTGCAGTTACATTAGCA 80
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1 ATGGAGCTTCCTTTGTTTGCAATCCTTCAAAGAACACCAAGAGTTGCAATTACATTAGCA 60
Query 81 TTTGTTCTATTTCTCTTCACAATAGT-CTATGCTTTTTATATTCTCTCCTGGCCAATCCA 139
|||||||||||| || |||||||||| | |||||| |||| ||||||| ||| |||||
Sbjct 61 TTTGTTCTATTTGTCCTCACAATAGTTCC-TGCTTTATATA--CTCTCCTTGCCGATCCA 117
Query 140 ATCTTACCTCCATCAATCTCATCATCCGAGGCTGA 174
||||||||||||||||||||||| | |||| ||||
Sbjct 118 ATCTTACCTCCATCAATCTCATCTTTCGAGACTGA 152
> AT5G15880.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:5185778-5187706
FORWARD LENGTH=1302
Length=1302
Score = 73.1 bits (39), Expect = 3e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Minus
Query 682 TGATGAAGACAGAGAACTAGAAAGCATCCCTCAAGAATGAGT 723
||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1302 TGATGAAGACAGATAACTAGAAAGCATCCCTCAAGAATGAGT 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5