BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941093

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16023.1 | Symbols: RTFL18, DVL1 | ROTUNDIFOLIA like 18 | ch...   267    4e-71
  AT1G67265.1 | Symbols: DVL3, RTFL21 | ROTUNDIFOLIA like 21 | ch...  97.1    5e-20


> AT5G16023.1 | Symbols: RTFL18, DVL1 | ROTUNDIFOLIA like 18 | 
chr5:5232731-5232886 REVERSE LENGTH=156
Length=156

 Score =  267 bits (144),  Expect = 4e-71
 Identities = 153/157 (97%), Gaps = 2/157 (1%)
 Strand=Plus/Plus

Query  22   ATGGAAATGAAGAAGGTCATGATGAGCTCAT-CAGAGAGATCAAAGGAGAAGAAGAGATC  80
            ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct  1    ATGGAAATGAAGAGGGTCATGATGAGCTC-TGCAGAGAGATCAAAGGAGAAGAAGAGATC  59

Query  81   AATAAGTAGAAGATTGGGGAAGTATATGAAGGAACAAAAGGGAAGGATTTACATCATCAG  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   AATAAGTAGAAGATTGGGGAAGTATATGAAGGAACAAAAGGGAAGGATTTACATCATCAG  119

Query  141  AAGATGTGTGGTCATGCTCCTTTGTTCGCATGATTGA  177
            ||||||| |||||||||||||||||||||||||||||
Sbjct  120  AAGATGTATGGTCATGCTCCTTTGTTCGCATGATTGA  156


> AT1G67265.1 | Symbols: DVL3, RTFL21 | ROTUNDIFOLIA like 21 | 
chr1:25175558-25176202 REVERSE LENGTH=645
Length=645

 Score = 97.1 bits (52),  Expect = 5e-20
 Identities = 62/67 (93%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  107  TGAAGGAACAAAAGGGAAGGATTTACATCATCAGAAGATGTGTGGTCATGCTCCTTTGTT  166
            |||| || |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  151  TGAAAGAGCAAAAGGGAAGGCTTTACATCATCAGAAGATGTGTGGTCATGCTCATTTGTT  210

Query  167  CGCATGA  173
             ||||||
Sbjct  211  GGCATGA  217



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8752435074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5