BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941107
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16150.1 | Symbols: GLT1, PGLCT | plastidic GLC translocator... 2591 0.0
> AT5G16150.1 | Symbols: GLT1, PGLCT | plastidic GLC translocator
| chr5:5272557-5275815 FORWARD LENGTH=1880
Length=1880
Score = 2591 bits (1403), Expect = 0.0
Identities = 1580/1666 (95%), Gaps = 9/1666 (1%)
Strand=Plus/Plus
Query 18 AAAATGCAGTCGTCAACGTATGCGGTTAAAGGAAACGCTGCGTTTGCGTTTCACAGACGG 77
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 100 AAAATGCAGTCGTCAACGTATGCGGTTAAAGGAAACGCTGCGTTTGCGTTTCAGAGACGG 159
Query 78 ACCTTCTCTTCTAACAGATCGACGACTTCTACCGGAATTCGCTTCGCTGGCAAGAAGAGC 137
|||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 160 ACCTTCTCTTCTGACAGATCGACGACTTCTACCGGAATTCGCTTCGCTGGTTATAAGAGC 219
Query 138 ATAGCCACCACCGGACCACTCTACTGTTCTGGTTC-GAAAGCCATGGGAGCTAAGCTTGC 196
||||||||||||| |||||||||||||||||||| | ||||||||||||| | ||||||
Sbjct 220 TTAGCCACCACCGGGCCACTCTACTGTTCTGGTTCTG-AAGCCATGGGAGCGACGCTTGC 278
Query 197 TCGTGCTGAAAACGGGATCCAGAGCGTTATGAGTTTCTCTTCGGTCAAAGCTCGATCGGT 256
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 279 TCGTGCTGATAACGGGATCCAGAGCGTTATGAGTTTCTCTTCTGTCAAAGCTCGATCGGT 338
Query 257 CAGAGCTCAAGCCTC--CT-CTGGAGATGCAGAAGAAGCTATACCTCTGAGATCTGAAGG 313
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 339 CAGAGCTCAAGCCTCATCTGATGGAGATGAAGAAGAAGCTATACCTCTGAGATCTGAAGG 398
Query 314 CAAAAGCTCTGGAACTGTTTTACCATTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTT 373
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 399 GAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTT 458
Query 374 TGGTTATCATCTTGGGGTAGTCAATGGTGCTCTTGAATACCTTGCTAAGGATCTTGGGAT 433
|||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 459 TGGTTATCATCTCGGGGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGAT 518
Query 434 CGCCGAGAATACTGTTTTGCAAGGATGGATTGTTAGTGCTCTGCTCGCTGGTGCAACGGT 493
|||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 519 CGCCGAAAATACTGTTTTGCAAGGATGGATTGTTAGTTCTCTGCTTGCTGGTGCTACGGT 578
Query 494 AGGTTCATTTACCGGAGGTGCATTAGCTGACAAATTTGGACGAACAAGAACTTTTCAATT 553
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AGGTTCATTCACTGGAGGTGCATTAGCTGACAAATTTGGACGAACAAGAACTTTTCAATT 638
Query 554 GGATGCTATCCCGCTTGCCATTGGAGCTTTCTTATGTGCAACAGCTCAGAGTGTGCAGAC 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GGATGCTATCCCGCTTGCCATTGGAGCTTTCTTATGTGCAACAGCTCAGAGTGTGCAGAC 698
Query 614 TATGATTGTGGGACGTTTGCTCGCAGGAATTGGAATCGGAATCTCATCAGCGATTGTACC 673
|||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 699 TATGATTGTGGGACGTCTGCTCGCTGGAATTGGAATTGGAATCTCATCAGCGATTGTACC 758
Query 674 ACTTTACATATCTGAGATATCACCAACTGAAATCCGCGGAGCACTCGGATCTGTGAACCA 733
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 759 ACTTTACATATCTGAGATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCA 818
Query 734 GTTGTTCATATGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAGCAAA 793
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GTTGTTCATCTGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAGCAAA 878
Query 794 CCCTCTATGGTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTACTGGCCAT 853
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 879 CCCTCTATGGTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCAT 938
Query 854 AGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGCAAGGAAAAGTCTCTCA 913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 939 AGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGCAAGGAAAAGTCTCTGA 998
Query 914 AGCTGAAAAGGCGATCAAAACTCTGTATGGTAAAGAAAGAGTTGTTGAACTAGTGCGTGA 973
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||
Sbjct 999 AGCTGAAAAGGCGATCAAAACTTTGTATGGTAAAGAAAGAGTGGTTGAACTAGTTCGCGA 1058
Query 974 CTTATCAACCTCTGGCCAAGGTTCTTCAGAGCCAGAAGCAGGATGGTTTGATCTATTCAG 1033
||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1059 CTTATCAGCCTCTGGCCAAGGTTCTTCTGAGCCGGAGGCAGGATGGTTTGATCTATTCAG 1118
Query 1034 CAGCCGCTACTGGAAAGTTGTAAGCGTAGGTGCTGCTCTGTTTTTGTTTCAACAGTTAGC 1093
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1119 CAGCCGCTACTGGAAAGTTGTAAGCGTAGGTGCGGCTCTCTTCTTGTTTCAACAGTTAGC 1178
Query 1094 CGGGATAAACGCAGTTGTGTACTACTCTACATCGGTGTTCCGTAGCGCTGGAATCCAATC 1153
||||||||||||||||||||| ||||| |||||||| |||||||| || |||||||||||
Sbjct 1179 CGGGATAAACGCAGTTGTGTATTACTCCACATCGGTATTCCGTAGTGCGGGAATCCAATC 1238
Query 1154 TGATGTTGCCGCCAGTGCTCTCGTTGGAGCATCGAATGTCTTTGGTACTGCTGTTGCTTC 1213
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1239 AGATGTTGCAGCCAGTGCTCTCGTTGGAGCATCAAATGTCTTTGGCACTGCTGTTGCTTC 1298
Query 1214 ATCCTTGATGGACAAAATGGGAAGGAAAAGTCTTTTACTCACAAGCTTTGGTGGAATGGC 1273
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1299 ATCGTTGATGGATAAAATGGGAAGGAAAAGTCTTTTACTGACAAGCTTTGGTGGAATGGC 1358
Query 1274 TTTGTCGATGCTGTTGCTCTCCTTGTCCTTCACATGGAAGGCTCTTGCTGCATATTCTGG 1333
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1359 TTTGTCAATGCTGTTACTCTCCTTGTCCTTCACATGGAAGGCTCTTGCTGCCTATTCTGG 1418
Query 1334 AACCCTTGCCGTTGTTGGAACTGTCCTATATGTCCTGTCATTCTCACTTGGTGCTGGCCC 1393
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1419 AACCCTTGCCGTTGTTGGAACTGTTCTATATGTCCTGTCATTCTCACTTGGTGCTGGCCC 1478
Query 1394 GGTACCTGCTCTTCTTCTTCCAGAGATATTCGCATCCCGAATCAGAGCTAAAGCAGTCGC 1453
|||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1479 GGTACCGGCTCTTCTTCTTCCAGAGATATTTGCATCCCGAATCAGAGCAAAAGCCGTCGC 1538
Query 1454 CCTTTCTCTTGGCATGCACTGGATATCAAACTTTGTGATTGGACTATACTTCTTAAGCGT 1513
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1539 TCTTTCTCTCGGCATGCACTGGATATCAAACTTTGTGATCGGACTATACTTCTTAAGCGT 1598
Query 1514 TGTGACTAGATTTGGAATCAGCAGTGTCTACTTGGGTTTTGCCGGAGTCTGCGTCCTTGC 1573
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1599 TGTGACTAAATTCGGAATCAGCAGTGTCTACTTGGGTTTTGCTGGAGTCTGCGTCCTTGC 1658
Query 1574 AGTCCTCTACATTGCAGGAAACGTCGTAGAGACTAAAGGGCGATCACTGGAGGAAATAGA 1633
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1659 GGTCCTCTACATTGCAGGAAACGTCGTCGAGACTAAAGGTCGATCACTGGAGGAAATAGA 1718
Query 1634 GCTTGCTCTTACCA-CTGGAGTTTGAATTTaaaaaaaaaaGAAATC 1678
|||||||||||| | |||||| ||||| ||||| |||| ||||||
Sbjct 1719 GCTTGCTCTTAC-ATCTGGAGCTTGAAATTAAACAAAA--GAAATC 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82931300340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5