BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941110
Length=2227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chlorop... 2431 0.0
> AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast
splicing factor CRS1 | chr5:5279884-5282898 FORWARD LENGTH=2163
Length=2163
Score = 2431 bits (1316), Expect = 0.0
Identities = 1598/1728 (92%), Gaps = 43/1728 (2%)
Strand=Plus/Plus
Query 1 AGTTGCAGACTTTTAATCAAATGCT-AACTTCTCTCCTCCTCTCGGCGCGAGCTTATCCA 59
||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||| ||||
Sbjct 95 AGTTGCAGACTTTTACTCAAATGCTAAAC-TCTCTCTTCCTCTCGGCGCGAGCTTTTCCA 153
Query 60 TCTCTGATCATAAATTCCTCCTTAAACCCTAATCAAAACCCTTCAAATGCG-GCTAAAA- 117
||| ||||| | | | ||| || || | | || ||| || ||||
Sbjct 154 TCTTTGATC----A------C-T-AACTCT--TC----CTC-TC---GGCGCGCCAAAAG 191
Query 118 TTCCCCAATTTGATCAATTTAGGGAAAACAGAGGACTCTCTGATGCTGCGATTAAGGTTC 177
|| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 192 TT-CCCAATTTGATCAGTTTAGGGAAAACAGAGGAGTCTCTGATGCTGCGATTAAGGTTC 250
Query 178 CTACTGCTCCATGGATGAAAGGTCCTCTCTTGCTTCGACCCGATGAGATTGTCGACACTG 237
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 251 CTACTGCTCCATGGATGAAAGGTCCTCTCTTGCTTCGACCCGATGAGATTCTCGACACTA 310
Query 238 AGAAGAGGAACAAGCCACGAAAAGTTGAAGAGAAGACGTTTAAGGCGTTGAACCGTAGAG 297
||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 311 AGAAGAGAAACAAGCCACGGAAAGTTGAAGAGAAGACGTTCAAGGCGTTGAATCGTAGAG 370
Query 298 AGAGTGGTGTCAGGGGGAAGAAAGCGATGAAGAAAATCGTGCGTAACGTTGAAAAGCTTG 357
||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 371 AGAGTGGTGTCAGAGGAAAGAAAGCGATGAAGAAGATCGTGCGTAACGTTGAAAAGCTCG 430
Query 358 ATGAAGGCAGTGATTCTGAAGAAACCCAGATGGATGATTTGAGCGAATTCGAGTATTTAG 417
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 ATGAAGATAGTGATTCTGAAGAAACCCAGATGGATGATTTGAGCGAATTCGAGTATTTAG 490
Query 418 GTCGAATTTCGGAGAAAATTGAGTCCAAGGATAGATTTGGCGGGAAAATGCCTTGGGATA 477
|||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 491 GTCGAATTGAGGAGAAAGTTGAGTCCAAGGATAGATTTGGCGGGAAAATGCCATGGGAGA 550
Query 478 GAGAAGAAGAGAGGTTTATATTGCGGAGGACGAAGAAGGAGGGAGTTCCGACTACGGCTG 537
|||||||||||||||||||||| |||||| |||||||||| | ||||||||||| ||||
Sbjct 551 GAGAAGAAGAGAGGTTTATATTAAGGAGGATGAAGAAGGAGAGCGTTCCGACTACTGCTG 610
Query 538 AGCTTATTCTTGACGAAGGATTGTTGAATAGACTGAGACGTGAAGCTTCGAAGATGAGAA 597
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AGCTTATTCTTGACGAGGGATTGTTGAATAGACTGAGACGTGAAGCTTCGAAGATGAGAA 670
Query 598 AATGGGTGAATGTGAGAAAAGCAGGTGTTACTGAGACAGTTGTGAATGAGATTAGATTGA 657
|||||||||||||||| |||||||||||||||||| |||||||||| |||||| || ||
Sbjct 671 AATGGGTGAATGTGAGGAAAGCAGGTGTTACTGAGTTAGTTGTGAATAAGATTAAATCGA 730
Query 658 TCTGGAAGTTGAAGGAGCTTGCTATGGTCAGATTTGATGTTCCTCTGTGTCGGAATATGG 717
| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 731 TGTGGAAGTTGAATGAGCTTGCTATGGTGAGATTTGATGTTCCTCTGTGTCGAAACATGG 790
Query 718 AACGAGCTCAAGAGATTATAGAGATGAAGACTGGAGGCTTGGTTGTGTTAAGCAAGAAGG 777
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AGCGAGCTCAAGAGATTATAGAGATGAAGACTGGAGGCTTGGTTGTGTTAAGCAAGAAGG 850
Query 778 AATTTGTAGTTGTTTATCGAGGAGGACCGAGTTATTCATCAGAGGAAACCCGTTCTGGAC 837
| ||| |||||||||||||||||||||||||||||||||| | | | | ||||
Sbjct 851 AGTTTTTAGTTGTTTATCGAGGAGGACCGAGTTATTCATC--A-G--A---G----GGAC 898
Query 838 AAGATGAGATTAGCTCATCATTGTACGAGAGAGAAGCTGATAGGTTATTGGATGGTTTGG 897
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 AAGATGAGATTAGCTCATCATTGTACGAGAGAGAAGCTGATAGGTTACTGGATGGTTTGG 958
Query 898 GACCTCGATATATGGATTGGTGGATGAGAAGACCGTTTCCAGTTGATGCTGACTTGCTTC 957
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 959 GACCTAGATATATGGATTGGTGGATGAGAAGACCGTTTCCCGTTGATGCTGACTTGCTTC 1018
Query 958 CTGAAGTGGTTAATGGATATAGGACTCCATCTAGACGTTGTCCACCAAACACTAGAGCTA 1017
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGAAGTTGTTAATGGATATATGACTCCATCTAGACGTTGTCCACCAAACACTAGAGCTA 1078
Query 1018 AGTTAAGCGATGAAGAGCTTACCTACTTGAGAAACATTGCTCAAGCTTTACCGTTTCATT 1077
|| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 AGCTAACCGATGAAGAGCTTACCTACTTGAGAAACATTGCTCAACCTTTACCGTTTCATT 1138
Query 1078 TCGTCCTTGGGAGGAACCACGGGCTTCAAGGTTTAGCTTCCGCTATTGTGAAGCTATGGG 1137
||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1139 TCGTCCTTGGGAGGAACTATGGGCTTCAAGGTTTAGCTTCCGCTATCGTGAAACTATGGG 1198
Query 1138 AGAAATGTATTATTGCAAAGATTGCAATCAAATGGGGAGCTCTCAATACAAACAATGAGG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGAAATGTATTATTGCAAAGATTGCAATCAAATGGGGAGCTCTCAATACAAACAATGAGG 1258
Query 1198 AAATGGCAGATGAACTGAAGCATCTCACTGGAGGAGTTCTGATACTACGCAACAAATACT 1257
|||||||||||||| ||| | |||||||||| || |||||||| ||||||||||||||||
Sbjct 1259 AAATGGCAGATGAATTGAGGTATCTCACTGGCGGTGTTCTGATTCTACGCAACAAATACT 1318
Query 1258 TGATAGTACTTTACAGAGGCAAGGACTTCCTTTCTGATGAAGTCGCGGATTTGGTTGATG 1317
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1319 TGATAGTACTATACAGAGGCAAGGACTTCCTTTCTGATGAGGTCGCGGATTTGGTTGAGG 1378
Query 1318 ACAGAGAGAGATTACTCAG-AGGATATCAACATTTTGAAGAAACTAAACGCGAGAGCGAT 1376
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 1379 ACAGAGAGAGATTACTCAGCAG-ATACCAACATTTTGAAGAAACTAAACGCGAGAGCGAT 1437
Query 1377 ATAGAAATCTTGGAGGTGGTAACAAATGGTAAACATTTGAAGGAATCAATCAAAAGTGGA 1436
|||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 1438 ATAGAACTCTTGGAGGTGGTAACAAATGGTAAACAGTTGAAGGAAACAAACAAAAGTGGA 1497
Query 1437 ACTTTATCAGAGTTTCAAGAACTTCAAAGAAAATTCGGAGAAATGGAGACGAGAAACCTA 1496
||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1498 ACTTTATTAGAGTTTCAAGAACTGCAAAGAAAATTCGGAGAAATGGACCCGAGAAACCTA 1557
Query 1497 GAGACTGAAGCTGAGAAAGCAAGACTAGAGAAGGAGCTCAGAAGCCAAGAACGCAAGCTT 1556
||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 1558 GAGACTGAAGCTGAGAAAGCAAGACTAGAGAAGGAACTCAAAAGCCAAGAACACAAGCTT 1617
Query 1557 TCCATTCTAAAATCAAAGATAGAGAAATCAACA-ATGGAGTTGTTTAAATTGAATTCTTT 1615
||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 1618 TCCATACTAAAATCAAAGATAGAGAAATCAA-ATATGGAGTTGTTTAAATTAAATTCTTT 1676
Query 1616 GTGGAAACCATCGGAGCGAGATGATGACATCGAGATATTTACTAATGAAGAAAGAGAATG 1675
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1677 GTGGAAACCATCGGAGGGAGATGATGACATCGAGATATTGACTAATGAAGAAAGAGAATG 1736
Query 1676 CTTGAGAAGAATAGGGCTGAAGATGAGTAGCAGCTTAGTTCTTGGTAG 1723
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1737 CTTGAGAAGAATAGGGCTGAAGATGAACAGCAGCTTAGTTCTTGGTAG 1784
Score = 593 bits (321), Expect = 2e-168
Identities = 363/384 (95%), Gaps = 0/384 (0%)
Strand=Plus/Plus
Query 1821 GGTAGAAGAGGAGTCTTTGTTGGTATAATGGAAGGTCTACATCAGCATTGGAAGCACAGG 1880
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1780 GGTAGAAGAGGAGTCTTTTTTGGTGTAATGGAAGGTCTACATCAGCATTGGAAGCACAGG 1839
Query 1881 GAGGTAGCAAAAGTGATCACGATGCAGAAGATTTTCTCCAGAGTTGTCTACACAGCGAAA 1940
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1840 GAAGTAGCAAAAGTGATCACGATGCAGAAGCTTTTCTCCAGAGTTGTCTACACAGCAAAA 1899
Query 1941 TCACTTGAAGCAGAGAGCAATGGAGTACTAATCTCAATCGAAAAACTTAAAGAAGGACAC 2000
| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1900 GCGCTTGAAACAGAGAGCAATGGAGTACTAATCTCAATCGAAAAACTTAAAGAAGGGCAC 1959
Query 2001 GCGATACTCATATACCGTGGCAAGAATTACAAACGTCCTTCATCAAAACTGATGGCACAG 2060
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1960 GCCATACTCATATACCGTGGCAAGAACTACAAACGTCCTTCATCGAAACTGATGGCACAG 2019
Query 2061 AATCTTTTGACGAAAAGAAAAGCGTTACAAAGATCTGTTGCGATGCAGCGGCTCGGCTCA 2120
||||||||||||||||||||||| || ||| ||||||||| ||||||||| |||||||||
Sbjct 2020 AATCTTTTGACGAAAAGAAAAGCATTGCAACGATCTGTTGTGATGCAGCGACTCGGCTCA 2079
Query 2121 CTGAAGTTCTTTGCTTATCagagagagagagTAATAGAAGATTTGAAGCTGAGTGTGGTA 2180
||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 2080 CTGAAGTTCTTTGCTTACCAGAGAGAGAGAGCAATAGAAGATTTGAAGGTGAGTTTGGTA 2139
Query 2181 AATCTTCAAGACTCTGCTTTCTGA 2204
||||||||||||||||||||||||
Sbjct 2140 AATCTTCAAGACTCTGCTTTCTGA 2163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110491399545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5