BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941112

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16200.1 | Symbols:  | 50S ribosomal protein-related | chr5:...   708    0.0  


> AT5G16200.1 | Symbols:  | 50S ribosomal protein-related | chr5:5289565-5290202 
REVERSE LENGTH=638
Length=638

 Score =  708 bits (383),  Expect = 0.0
 Identities = 483/529 (91%), Gaps = 15/529 (3%)
 Strand=Plus/Plus

Query  1    GATCCACCGTTGGATCTCACGATGTCACTCTCCGGTCTACACAAATTCAAGCTCTTCGCC  60
            |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct  32   GATCCACCGTTGAATCTCACGATGTCACTCTCCCGTCTACACAAATTCAAGCTCTTCGCG  91

Query  61   GCACATCGTAGCTTGGAAGCGTCCACCGCGGGGAACCCCACGATGAGTCCGACGAAGAGC  120
            ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||
Sbjct  92   GCACATCGTAGCTTGGAAGCGTCCACCGCGGGGAGTCCCACGATGAGTCCAACGAAGAGC  151

Query  121  CCTGTATTCAATCTCCGACGACGCAAAACCCTGCGGATGTTGTTCGAAAAGAGCTCTGAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || 
Sbjct  152  CCTGTATTCAATCTCCGACGACGCAAAACCCTGCGGATGTTGTTCGATAAGAGCTCCGA-  210

Query  181  T-GTCGCAGACGGAATCTCCGTCAGATCCTCGAGGAATCTCCGGAATCAGATGGAAATTC  239
            | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  211  TAGTCGCAGACGGAATCTCCGTCAGATCCTTGAGGAATCTCCGGAATCAGATGGAAATTC  270

Query  240  CGGAAAAAAGAAGAGGGGAAACCACCGTG---CTAGGCGTAAATTGAGAGAGCTCTTGGT  296
            ||| || ||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct  271  CGGGAATAAGAAGAGGGGAAACCACCGTGCTACTAGGCGTAAATTGAGAGAGCTCTTGGT  330

Query  297  CACATCGCCGTCGCCGCCGTGCGAAGGTAGAGAAGAGATATACGGAAATAGAGAAGAGGG  356
            |||||||||||||||||||| | |||| |||||||| ||| |||||| | |||||||| |
Sbjct  331  CACATCGCCGTCGCCGCCGTACAAAGGCAGAGAAGATATAGACGGAATTGGAGAAGAGAG  390

Query  357  TAGCGAGATTTCGCCGGTAACCGCCAGCTCCGTTGCTTCTAACGGTGACGGCAAAGAGTT  416
             ||||||||||||||| ||| || || ||   |  |    ||||||||||||| ||||||
Sbjct  391  AAGCGAGATTTCGCCGTTAAACGTCA-CT---T--CA---AACGGTGACGGCAGAGAGTT  441

Query  417  AACGGCTCGACGATTCGGTTCGTCCGGTTCGGTTCAATCATTTCGGTTGAGGATTTTGAG  476
            ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct  442  AACGGCTCGACGATTCGGTTCATCCGGTTCGGTTCAATCATTTCGGTTAAGGATTTTAAG  501

Query  477  AAAACCATGGCGACCAGTCTTGGTTTCTATTCCTGAACAACAA-TAAAA  524
            ||||||||||||||||||| |||||||||||||||| ||| || |||||
Sbjct  502  AAAACCATGGCGACCAGTCCTGGTTTCTATTCCTGAGCAATAAATAAAA  550



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25971053999


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5