BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941117
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16240.1 | Symbols: | Plant stearoyl-acyl-carrier-protein d... 1831 0.0
AT3G02630.1 | Symbols: | Plant stearoyl-acyl-carrier-protein d... 1253 0.0
> AT5G16240.1 | Symbols: | Plant stearoyl-acyl-carrier-protein
desaturase family protein | chr5:5306807-5309932 FORWARD LENGTH=1652
Length=1652
Score = 1831 bits (991), Expect = 0.0
Identities = 1161/1239 (94%), Gaps = 27/1239 (2%)
Strand=Plus/Plus
Query 1 TTG-TTCGTTGAGAAGAAACAATGGTTATGGCTATGGATCGGATCGCTTTGTTCTCTTCC 59
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 TTGTTTCGTTAAGAAGAAACAATGGTTATGGCTATGGATCGGATCGCTTTGTTCTCTTCC 213
Query 60 TCATCATCTGTTTATCAT--C-GTTCTTCTCATTCTCATGGCTCCAAATCATCCAGAGTT 116
|||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 214 TCATCATCTGTTTATCATCACGGTTCTTCTCATTCTCATGGCTCCAAATCTTCCAGAG-- 271
Query 117 TCCATGGCTTCCACTATTCGTTCCGACTCTACAGACGATACAAATGGAAGGAAACCGTAT 176
| | || ||||||||||||||||||||||| || | ||||||||||| ||||
Sbjct 272 T---T---TT-CACTATTCGTTCCGACTCTACAG-CGGT-----TGGAAGGAAACTGTAT 318
Query 177 ATCCCTCCTCGAGAGGTTCATCTTCAAGTGAAATATTCAATGCCACCACAAAAGCTGGAG 236
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 319 ATTCCTCCTCGAGAGGTTCATCTTCAAGTGAAGTATTCAATGCCACCACAAAAGCTGGAG 378
Query 237 ATTTTCAAGTCCTTAGAAGGATGGGCTAATGAGAACTTGTTGAC-TAATCTAAAACCAGT 295
|||||||||||||||||||||||||||||||| ||||||||| | || | ||||||| ||
Sbjct 379 ATTTTCAAGTCCTTAGAAGGATGGGCTAATGACAACTTGTTGGCTTACT-TAAAACCTGT 437
Query 296 TGAGAAATCATGGCAGCCAACAGATTATCTCCCTGAACCTGAGTCAGAAGGATTCTTTGA 355
||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 438 TGAGAAATCATGGCAACCAACTGATTTTCTCCCTGAACCTGAGTCAGAAGGATTCTATGA 497
Query 356 CCAAGTTAAGGAGTTAAGAGAAAGGTGTAAGGAGCT-TACTGATGACTACTTTGTAGTGC 414
|||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||
Sbjct 498 CCAAGTTAAGGAGTTAAGAGAAAGGTGTAAGGAGCTCT-CTGATGACTACCTTATAGTGC 556
Query 415 TTGTTGGTGATATGATCACAGAGGAAGCACTCCCGACTTATCAGACTATGATTAATACAT 474
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 557 TTGTTGGTGATATGATCACAGAGGAAGCACTTCCGACTTATCAGACCATGATTAATACAT 616
Query 475 TGGACGGGGTTAGAGATGAGACGGGAGCAAGTCCTACTCCTTGGGCTGTATGGACAAGGG 534
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 617 TGGACGGGGTTAGAGATGAGACGGGAGCAAGTCCAACTCCTTGGGCAGTATGGACTAGGG 676
Query 535 CCTGGACTGCCGAAGAGAATAGACATGGTGATCTTCTTAACAAGTATCTTTACCTGTCTG 594
| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 677 CATGGACTGCGGAAGAGAATAGACATGGTGATCTTCTTAACAAGTACCTTTATCTGTCTG 736
Query 595 GACGAGTAGACATGAGACAGATTGAAAAAACTATTCAATACCTCATTGGTTCTGGAATGG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GACGAGTAGACATGAGACAGATTGAAAAAACTATTCAATACCTCATTGGTTCTGGAATGG 796
Query 655 ATCCAAAAACTGAAAACAATCCTTACCTGGGATTCATCTACACTTCTTTTCAAGAAAGAG 714
|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 797 ATCCAAAAACTGAAAACAATCCTTACTTGGGATTCATATATACTTCTTTTCAAGAAAGAG 856
Query 715 CAACATTCATCTCCCATGGAAACACTGCTAAACTGGCAAAGGATCTTGGAGACTTGAAAC 774
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 857 CTACATTCATCTCCCATGGAAACACTGCTAGACTGGCAAAGGATCTTGGAGACTTGACAC 916
Query 775 TTGCTCAGATTTGTGGCACCATTGCTGCTGATGAGAGGCGCCATGAACACGCCTACACCA 834
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TTGGGAAGATTTGTGGCACCATTGCTGCTGATGAGAGGCGCCATGAACACGCCTACACCA 976
Query 835 AGATTGTAGAAAAGCTATTTGAAATTGATCCTGATACCACAATCGTGGGCTTTGCTGACA 894
|||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 977 AGATTGTAGAGAAGCTCTTTGAAATTGATCCTGATACCACAGTCGTGGGCTTTGCTGACA 1036
Query 895 TGATGAAGAAAAAGATCTCAATGCCTGCTCATTTGATGTACGATGGTCGTGATGATAATC 954
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1037 TGATGAGGAAAAAGATCTCGATGCCTGCTCATTTGATGTATGATGGTCGTGATGATAATC 1096
Query 955 TATTTGATCACTTCTCGTCCGTGGCCCAGAGGCTTGGTGTCTACACTGCCAGAG-ACTAT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1097 TATTTGATCACTTCTCGTCCGTGGCCCAGAGGCTTGGTGTCTACACTGCCA-AGGACTAT 1155
Query 1014 GCTGATATACTGCAATTTCTTGTGCAAAGGTGGAATGTGGAGAAGTTGTCAGACCTTTCT 1073
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1156 GCTGATATACTGCAACATCTTGTGGAAAGGTGGAATGTGGAGAAGTTGTCAGACCTTTCT 1215
Query 1074 AGTGAAGGACACAGGGCCCAGGACTATCTCTGTGGATTGCCTGCTAGGATCCGCAAACTT 1133
||||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1216 AGTGAAGGAAACAGGGCCCAGGACTACCTCTGTGGATTACCTGCTAGAATCCGCAAACTT 1275
Query 1134 GAAGAAAGAGCTCAAGGGAGAAGCAAAGAAGCTGCAAAAAACATACCATTCAGCTGGATT 1193
||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1276 GAAGAGAGGGCTCAAGGGAGAACCAAAGAAGCAGCAAAAAACATACCATTCAGCTGGATT 1335
Query 1194 TTTGGTCGA-AAGATCAGGGCTTAAAAGAAGTAATGTTA 1231
||||||||| ||| |||||||||||||||||||||||||
Sbjct 1336 TTTGGTCGAGAAG-TCAGGGCTTAAAAGAAGTAATGTTA 1373
> AT3G02630.1 | Symbols: | Plant stearoyl-acyl-carrier-protein
desaturase family protein | chr3:562030-564870 FORWARD LENGTH=1671
Length=1671
Score = 1253 bits (678), Expect = 0.0
Identities = 1053/1231 (86%), Gaps = 37/1231 (3%)
Strand=Plus/Plus
Query 7 GTT-GAGAAGAAAC-AATGGTTATGGCTATGGATCGGATCGCTTTGTTCTCTTCCTCATC 64
||| |||||||| | ||||| ||||||||||||||||||| | ||||| || | ||
Sbjct 119 GTTAGAGAAGAATCAAATGGCGATGGCTATGGATCGGATCG---TCTTCTC--CC-CTTC 172
Query 65 ATCTGTTTATC-ATCGTTCTTCTCATTCTCA-TGGCTCCAAATCATCCAGAGTTTCCATG 122
|||| | || ||||| ||| ||| || | || |||| ||| |||||||||||||||
Sbjct 173 ATCT-TACGTCTATCGTCCTTGTCAAGCT-AGGGGATCCAGATCTTCCAGAGTTTCCATG 230
Query 123 GCTTCCACTATTCG-T-TCCGACTCTACAGACGATACAAATGGAAGGAAACCGTATATCC 180
||||| || ||||| | | ||| ||||||| | ||| ||||||||||||| ||||||||
Sbjct 231 GCTTCTACGATTCGCTCTGCGA--CTACAGAGGTTACGAATGGAAGGAAACTGTATATCC 288
Query 181 CTCCTC-GAGAGGTTCATCTTCAAGTGAAATATTCAATGCCACCACAAAAGCTGGAGAT- 238
|||| | ||||||| ||| | ||||| ||| |||||||||| ||||||||| | |||||
Sbjct 289 CTCC-CAGAGAGGTGCATGTCCAAGTCAAACATTCAATGCCGCCACAAAAGTTAGAGATC 347
Query 239 TTTCAAGTCCTTAGAAGGATGGGCTAATGAGAA-CTTGTTGACTAATCTAAAACCAGTTG 297
||| ||||| ||||||||||||||| |||| || | |||||||| || ||||||| ||||
Sbjct 348 TTT-AAGTCTTTAGAAGGATGGGCTGATGA-AACCCTGTTGACTTATTTAAAACCTGTTG 405
Query 298 AGAAATCATGGCAGCCAACAGATTATC-TCCCTGAACCTGAGTCAGAAGGATTCTTTGAC 356
||||||| |||||||| || |||| || |||| ||||||||||| |||||||||| ||||
Sbjct 406 AGAAATCGTGGCAGCCTACCGATTTTCTTCCC-GAACCTGAGTCGGAAGGATTCTATGAC 464
Query 357 CAAGTTAAGGAGTTAAGAGAAAGGTGTAAGGAGCTTACTGATGACTACTTTGTAGTGCTT 416
||||| |||||| |||| |||||||| ||||| ||| |||||||||| ||||| ||||||
Sbjct 465 CAAGTCAAGGAGCTAAGGGAAAGGTGCAAGGAACTTCCTGATGACTATTTTGTGGTGCTT 524
Query 417 GTTGGTGATATGATCACAGAGGAAGCACTCCCGACTTATCAGACTATGATT-AATACATT 475
||||| ||||||||||| || |||||||| || ||||| ||||| ||| || || |||||
Sbjct 525 GTTGGGGATATGATCACTGAAGAAGCACTTCCTACTTACCAGACCATG-TTGAACACATT 583
Query 476 GGACGGGGTTAGAGATGAGACGGGAGCAAGTCCTACTCCTTGGGCTGTATGGACAAGGGC 535
||| || ||||| |||||||| ||||| |||||||||||||||||| ||||||| |||||
Sbjct 584 GGATGGTGTTAGGGATGAGACAGGAGCTAGTCCTACTCCTTGGGCTATATGGACCAGGGC 643
Query 536 CTGGACTGCCGAAGAGAATAGACATGGTGATCTTCTTAACAAGTATCTTTACCTGTCTGG 595
|||||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 644 TTGGACTGCTGAGGAGAATAGACATGGGGATCTCCTTAACAAGTATCTTTATCTGTCTGG 703
Query 596 ACGAGTAGACATGAGACAGATTGAAAAAACTATTCAATACCTCATTGGTTCTGGAATGGA 655
|| ||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 704 TCGGGTAGACATGAGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATGGA 763
Query 656 TCCAAAAACTGAAAACAATCCTTACCTGGGATTCATCTACACTTCTTTTCAAGAAAGAGC 715
|||||||||||||||||| |||||| |||| ||||||||||| || ||||||||||||||
Sbjct 764 TCCAAAAACTGAAAACAACCCTTACTTGGGTTTCATCTACACATCATTTCAAGAAAGAGC 823
Query 716 AACATTCATCTCCCATGGAAACACTGCTAAACTGGC-AAAGGATCTTGGAGACTTGAAAC 774
|| ||||||||||||||||||||||| | |||||| ||| |||| |||||| |||||||
Sbjct 824 GACCTTCATCTCCCATGGAAACACTGCCAGACTGGCGAAA-GATCGTGGAGATTTGAAAC 882
Query 775 TTGCTCAGATTTGTGGCACCATTGCTGCTGATGAGAGGCGCCATGAACAC-GCCTACACC 833
|||| ||||| || || ||||||||||||||||||||||| |||| | || || ||||||
Sbjct 883 TTGCGCAGATATGCGGGACCATTGCTGCTGATGAGAGGCGTCATG-AGACTGCTTACACC 941
Query 834 AAGATTGTAGAAAAGCTATTTGAAATTGATCCTGATACCACAATCGTGGGCTTTGCTGAC 893
||||||||||| ||||| ||||||||||| |||||| ||| ||| ||||| | |||||
Sbjct 942 AAGATTGTAGAGAAGCTCTTTGAAATTGACCCTGATGGCACGATCTTGGGCCTGGCTGAT 1001
Query 894 ATGATGAAGAAAAAGATCTCAATGCCTGCTCATTTGATGTACGATGGTCGTGATGATAAT 953
||||||||||||||||| ||||||||||| ||||| ||||| ||||| | ||||||||
Sbjct 1002 ATGATGAAGAAAAAGATATCAATGCCTGCACATTTAATGTATGATGGCCAAGATGATAAC 1061
Query 954 CTATTTGATCACTTCTCGTCCGTGGCCCAGAGGCTTGGTGTCTACACTGCC-AGAGACTA 1012
|| ||||| |||||||| |||| ||||||||||| ||||||||||||||| || |||||
Sbjct 1062 CTGTTTGAGCACTTCTCAACCGTTGCCCAGAGGCTCGGTGTCTACACTGCCAAG-GACTA 1120
Query 1013 TGCTGATATACTGCAATTTCTTG-TGCAAAGGTGGAATGTGGAGAAGTTGTCAGACCTTT 1071
||||||||| ||| | ||||||| || || ||||||||||||||| ||| |||||||||
Sbjct 1121 TGCTGATATTCTGGAGTTTCTTGTTG-AACGGTGGAATGTGGAGACTTTGACAGACCTTT 1179
Query 1072 CTAGTGAAGGACACAGGGCCCAGGACTATCTCTGTGGATTGCCTGCTAGGATCCGCAAAC 1131
||||||||||||||||||||||||||| | |||| ||| | ||||| || ||||| |||
Sbjct 1180 CTAGTGAAGGACACAGGGCCCAGGACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAA 1239
Query 1132 TTGAAGAAAGAGCTCAAGGGAGAAGC-AAAGAAGCTGCAAAAAACATACCATTCAGCTGG 1190
||||||| ||||||||||| ||| || ||||||||||| |||||||||||||||||||||
Sbjct 1240 TTGAAGAGAGAGCTCAAGGAAGA-GCCAAAGAAGCTGCCAAAAACATACCATTCAGCTGG 1298
Query 1191 ATTTTTGGTCGAAAGATCAGGGCTTAA-AAG 1220
|| ||||||||||| |||||||||||| |||
Sbjct 1299 ATATTTGGTCGAAATATCAGGGCTTAAGAAG 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792859995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5