BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941127
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02700.1 | Symbols: | NC domain-containing protein-related ... 294 7e-79
> AT3G02700.1 | Symbols: | NC domain-containing protein-related
| chr3:581541-582949 REVERSE LENGTH=1081
Length=1081
Score = 294 bits (159), Expect = 7e-79
Identities = 429/555 (77%), Gaps = 36/555 (6%)
Strand=Plus/Plus
Query 20 GATGGGATTACTCTCAAACCAAATCTCCAGAGAGAC-AT-TGAAGCCTGGAGATCACATC 77
||||||||| || || || |||||||| |||||| || |||| || || |||||||||
Sbjct 136 GATGGGATTCCTTTCCAATAAAATCTCC--AGAGACGATGTGAAACCAGGCGATCACATC 193
Query 78 TACTCATGGCGTAC-CGCTTATATCTACTCTCACCACGGAATCTATGTAGGCGAT-GAGA 135
|| ||||||||| | || || || ||| |||| ||||||||||||||||| || || |
Sbjct 194 TATTCATGGCGT-CAAGCCTACATTTACGCTCATCACGGAATCTATGTAGGTAATGGACA 252
Query 136 AGGTGATA-CATTTCACTCGTGGAGGTGGTCTGGAAACCGGAACCGGGACTTTCCTGGAC 194
| || | | ||||| |||||||| | ||||| || || ||||| ||||||||| |||||
Sbjct 253 A-GTCA-ACCATTTTACTCGTGGTGATGGTCAAGAGACTGGAACTGGGACTTTCTTGGAC 310
Query 195 AAGTTCATCGCTAGTTCTGT-TCCGAATCATGGAGGAGACAACAACCCGTGTCCTAAGTG 253
|| |||| | |||||| | || |||||| |||| ||||||| |||||| | ||
Sbjct 311 AACATCATTGTTAGTTC-ATCTCATAATCAT---GGAG---ACAACCCATGTCCTGATTG 363
Query 254 TGGAGATCAATCCAAACGCGACGGTGTAATCTCTTCTTGCCTTGATTGCTTT-CTCGCCG 312
|||||||| |||||| | | |||||| || ||||| |||||||| || ||| || ||||
Sbjct 364 TGGAGATCGATCCAATCTTGGCGGTGTTATATCTTCCTGCCTTGAATG-TTTCCTTGCCG 422
Query 313 GAGGAAACCTCTATCTCTTCGAGTACGGTGTCTCTCCAGCTTTCTTTGTCGCAAAACAAC 372
|||| | |||||| |||| |||||| |||| || || ||| ||||| | || |||| |
Sbjct 423 GAGGTGATCTCTATGTCTTTGAGTACAGTGTTTCCCCTGCTATCTTTCTTGCCAAACCTC 482
Query 373 GAGG-AG-GTACTTGCACAACAGCACCTTCAGATCCTCCTGAAGAAGTTAT-TTTCCGTG 429
|||| | ||| ||||| | |||| ||||||||||||| |||||||| || | | || |
Sbjct 483 GAGGCGGCGTA--TGCACTATAGCATCTTCAGATCCTCCAGAAGAAGTCATCTAT-CGAG 539
Query 430 CGAAATTCCTCTTATTGCGAAACGCTTTCGGTGCT-TACAATCTGTTTGAGAACAACTGT 488
| ||||| || | |||| ||| | ||| |||| | |||||| | || |||||||||||
Sbjct 540 C-AAATT-TTC-TCTTGCAAAATGGTTTTGGTG-TGTACAATGTCTTCAAGAACAACTGT 595
Query 489 GAAGATTTTGCCATCTATTGCAAATCTGGTTTGGTTGTCATGTCAAATATCAA-GTTGGG 547
|||||||||||||||||||||||| | |||||| | || | |||| | | | || |||
Sbjct 596 GAAGATTTTGCCATCTATTGCAAAACGGGTTTGCTAGTG--G-CAAACACCGACGT-GGG 651
Query 548 AAGTAGTGGTCAAGC 562
||| |||||||||||
Sbjct 652 AAGGAGTGGTCAAGC 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37223502927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5