BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941131
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16380.1 | Symbols: | Protein of unknown function, DUF538 |... 965 0.0
> AT5G16380.1 | Symbols: | Protein of unknown function, DUF538
| chr5:5359363-5360710 REVERSE LENGTH=1052
Length=1052
Score = 965 bits (522), Expect = 0.0
Identities = 593/626 (95%), Gaps = 9/626 (1%)
Strand=Plus/Plus
Query 11 tttttAATTCAATGGGTACTACTAGTCGAGatctcttcttcatcatcttcgctctcttct 70
||||| ||||||||||| | |||||| ||||||||||||| ||||| ||| ||||||||
Sbjct 88 TTTTT-ATTCAATGGGT--T-CTAGTCAAGATCTCTTCTTCCTCATCATCGTTCTCTTCT 143
Query 71 catcgattctc-ttccttcagctttcctcGTTACCGGATCCGTCGTTTTACGATTATCTC 129
| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 144 CCTCGATTCTCTTTCC-TCAGCTTTCCTCGCTACCGGATCCGTCGTTTTACGATTATCTC 202
Query 130 CGGGAAAGCAATCTTCCCGCCGGAATAGTTCCAAAAGGAGTTACTAATTTCTCGATCGAC 189
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 203 CGGGAAAGCAATCTTCCCGCCGGAATAGTTCCCAAAGGAGTTACCAATTTCTCGATCGAC 262
Query 190 GTCAAAACGGGGCGTTTCACCGTCGCTCTCCCTGTTCCTTGCGATGCTAAATTCGAGAAC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 ATCAAAACGGGGCGTTTCACCGTCGCTCTCCCTGTTCCTTGCGATGCTAAATTCGAGAAT 322
Query 250 CAGTTCCACTTCGACTATAACATCTCCGGCGTTCTCTCCGATGGACGGATCGGGAATTTA 309
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 323 CAGTTCCACTTCGACTACAATATCTCCGGCGTTCTCTCCGATGGACGGATCGGGAATTTA 382
Query 310 TCTGGTGTGACGCAGAAGGAGCTGTT-CTTGTGGTTTGCTGTTAAGGGAATACATGTGGA 368
|||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||| ||
Sbjct 383 TCTGGTGTGACGCAGAAGGAGCTGTTTCTT-TGGTTTGCTGTGAAAGGAATACATGTTGA 441
Query 369 TCCGGAGAGCTCTGGGTTAATTCACTTTGATGTCGGTGTCGCTGATAAGCAGCTTTCTCT 428
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TCCGCAGAGCTCTGGGTTAATTCACTTTGATGTCGGTGTCGCTGATAAGCAGCTTTCTCT 501
Query 429 CTCGCTCTTTGAGTCGCCTCGAGATTGCACCGCCGCGGAATCTCAACCTCGTGCGGTTGA 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TTCGCTCTTTGAGTCGCCTCGAGATTGCACCGCCGCGGAATCTCAACCTCGTGCGGTTGA 561
Query 489 TTTCTCTAGACCCCGTGATTTGGAGAGGCAATCTGAAGAAATCCAATCGACAATGCAGAA 548
| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 562 TCTCTCTAGACCCCGTGATTTGGAGAAGCAATCTGAAGAAATGCAATCGACAATGCAGAA 621
Query 549 GAAATCTGAAGATATCCAATCGATATTTGGACCACGAAGAAATCGCTGGACATTAGGTTT 608
| || ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 622 GCAACCTGAAGAGATCCAATCGATATTTGGACCACGAAGAAGTCGCTGGACATTAGGTTT 681
Query 609 TTGAT-TGAGGCTTAGAAGGAAGTGC 633
||||| ||||||||||||||||||||
Sbjct 682 TTGATCTGAGGCTTAGAAGGAAGTGC 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5