BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941131 Length=633 Score E Sequences producing significant alignments: (Bits) Value AT5G16380.1 | Symbols: | Protein of unknown function, DUF538 |... 965 0.0 > AT5G16380.1 | Symbols: | Protein of unknown function, DUF538 | chr5:5359363-5360710 REVERSE LENGTH=1052 Length=1052 Score = 965 bits (522), Expect = 0.0 Identities = 593/626 (95%), Gaps = 9/626 (1%) Strand=Plus/Plus Query 11 tttttAATTCAATGGGTACTACTAGTCGAGatctcttcttcatcatcttcgctctcttct 70 ||||| ||||||||||| | |||||| ||||||||||||| ||||| ||| |||||||| Sbjct 88 TTTTT-ATTCAATGGGT--T-CTAGTCAAGATCTCTTCTTCCTCATCATCGTTCTCTTCT 143 Query 71 catcgattctc-ttccttcagctttcctcGTTACCGGATCCGTCGTTTTACGATTATCTC 129 | ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 144 CCTCGATTCTCTTTCC-TCAGCTTTCCTCGCTACCGGATCCGTCGTTTTACGATTATCTC 202 Query 130 CGGGAAAGCAATCTTCCCGCCGGAATAGTTCCAAAAGGAGTTACTAATTTCTCGATCGAC 189 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 203 CGGGAAAGCAATCTTCCCGCCGGAATAGTTCCCAAAGGAGTTACCAATTTCTCGATCGAC 262 Query 190 GTCAAAACGGGGCGTTTCACCGTCGCTCTCCCTGTTCCTTGCGATGCTAAATTCGAGAAC 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 ATCAAAACGGGGCGTTTCACCGTCGCTCTCCCTGTTCCTTGCGATGCTAAATTCGAGAAT 322 Query 250 CAGTTCCACTTCGACTATAACATCTCCGGCGTTCTCTCCGATGGACGGATCGGGAATTTA 309 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 323 CAGTTCCACTTCGACTACAATATCTCCGGCGTTCTCTCCGATGGACGGATCGGGAATTTA 382 Query 310 TCTGGTGTGACGCAGAAGGAGCTGTT-CTTGTGGTTTGCTGTTAAGGGAATACATGTGGA 368 |||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||| || Sbjct 383 TCTGGTGTGACGCAGAAGGAGCTGTTTCTT-TGGTTTGCTGTGAAAGGAATACATGTTGA 441 Query 369 TCCGGAGAGCTCTGGGTTAATTCACTTTGATGTCGGTGTCGCTGATAAGCAGCTTTCTCT 428 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 TCCGCAGAGCTCTGGGTTAATTCACTTTGATGTCGGTGTCGCTGATAAGCAGCTTTCTCT 501 Query 429 CTCGCTCTTTGAGTCGCCTCGAGATTGCACCGCCGCGGAATCTCAACCTCGTGCGGTTGA 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 502 TTCGCTCTTTGAGTCGCCTCGAGATTGCACCGCCGCGGAATCTCAACCTCGTGCGGTTGA 561 Query 489 TTTCTCTAGACCCCGTGATTTGGAGAGGCAATCTGAAGAAATCCAATCGACAATGCAGAA 548 | |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 562 TCTCTCTAGACCCCGTGATTTGGAGAAGCAATCTGAAGAAATGCAATCGACAATGCAGAA 621 Query 549 GAAATCTGAAGATATCCAATCGATATTTGGACCACGAAGAAATCGCTGGACATTAGGTTT 608 | || ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 622 GCAACCTGAAGAGATCCAATCGATATTTGGACCACGAAGAAGTCGCTGGACATTAGGTTT 681 Query 609 TTGAT-TGAGGCTTAGAAGGAAGTGC 633 ||||| |||||||||||||||||||| Sbjct 682 TTGATCTGAGGCTTAGAAGGAAGTGC 707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30542361376 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5